TFR analysis with more flexibility #8380#8397
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mehdikuchi wants to merge 109 commits intomne-tools:mainfrom
Closed
TFR analysis with more flexibility #8380#8397mehdikuchi wants to merge 109 commits intomne-tools:mainfrom
mehdikuchi wants to merge 109 commits intomne-tools:mainfrom
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* Use 1900-01-01 00:00:00 for invalid EDF dates * Set invalid date to None * Add test * Use _TempDir * Add changes/latest.inc entry * Include GH PR numbers * Forgot angle brackets * Use :gh: Co-authored-by: Eric Larson <larson.eric.d@gmail.com> * More :gh: Co-authored-by: Eric Larson <larson.eric.d@gmail.com> * Change gh- to # Co-authored-by: Eric Larson <larson.eric.d@gmail.com>
* bump copyright year * add keywords and URLs to setup Co-authored-by: Eric Larson <larson.eric.d@gmail.com>
* BUG: Fix add_reference_channels * FIX: Flake
* ADding updated documentation>'g * Fixing upper caseing of nk. * Update tutorials/io/plot_20_reading_eeg_data.py Co-authored-by: Eric Larson <larson.eric.d@gmail.com> * Update tutorials/io/plot_20_reading_eeg_data.py Co-authored-by: Eric Larson <larson.eric.d@gmail.com> * Update tutorials/io/plot_20_reading_eeg_data.py Co-authored-by: Eric Larson <larson.eric.d@gmail.com> * Update tutorials/io/plot_20_reading_eeg_data.py Co-authored-by: Richard Höchenberger <richard.hoechenberger@gmail.com> * Update mne/io/nihon/nihon.py Co-authored-by: Richard Höchenberger <richard.hoechenberger@gmail.com> * Update tutorials/io/plot_20_reading_eeg_data.py Co-authored-by: Richard Höchenberger <richard.hoechenberger@gmail.com> * Update tutorials/io/plot_20_reading_eeg_data.py Co-authored-by: Richard Höchenberger <richard.hoechenberger@gmail.com> * Update tutorials/io/plot_20_reading_eeg_data.py Co-authored-by: Richard Höchenberger <richard.hoechenberger@gmail.com> * Update tutorials/io/plot_20_reading_eeg_data.py Co-authored-by: Richard Höchenberger <richard.hoechenberger@gmail.com> * DOC: Update latest Co-authored-by: Eric Larson <larson.eric.d@gmail.com> Co-authored-by: Richard Höchenberger <richard.hoechenberger@gmail.com>
`ICA.plot_overlay()` didn't seem to work on my system with latest Matplotlib anymore (macOS, both the default and Qt5Agg backends). I would only see black traces. Debugging showed that changig the colors of lines in a figure that has been `show()`n was somehow part of the problem. Now we only `show()` once all plotting operations are done, and this now works with the default macOS and the Qt5Agg backends for me.
…s#8344) * BUG: Fix handling of axes with constrained_layout=True * FIX: Version
* BUG: Force keywords for verbose in short sigs * FIX: Doc
* fix split files issue on dashes * style fix * TST: Add test case * update doc * new author contributions Co-authored-by: examplename <e.ort@vu.nl> Co-authored-by: Eric Larson <larson.eric.d@gmail.com>
* Update _add_mesh * Update mne/viz/backends/_pyvista.py Co-authored-by: Eric Larson <larson.eric.d@gmail.com> * Show the plotter when ready * Remove empty line * Fix save_movie action * Fix show Co-authored-by: Eric Larson <larson.eric.d@gmail.com>
* rank was not passed to compute_depth_prior * update what's new
* Expose _set_3d_view and _set_3d_title * Fix style * Improve coverage * Improve coverage * Improve coverage * Improve coverage
larsoner
reviewed
Oct 21, 2020
* use a variable for min python version * recommend conda-forge to install mne * recommend conda-forge-based installation * fix include path * clarify quickstart * use replace vars in install instructions * clarify install instructions * add page with guidance for upgrading * split out python from MNE install page * deduplicate * simpler * fix command * tweaks * add miniforge * Apply suggestions from code review Co-authored-by: Richard Höchenberger <richard.hoechenberger@gmail.com> Co-authored-by: Robert Luke <748691+rob-luke@users.noreply.github.com> Co-authored-by: Clemens Brunner <clemens.brunner@gmail.com> * more changes from code review * better windows formatting * fix macos paths * more equals signs Co-authored-by: Richard Höchenberger <richard.hoechenberger@gmail.com> Co-authored-by: Richard Höchenberger <richard.hoechenberger@gmail.com> Co-authored-by: Robert Luke <748691+rob-luke@users.noreply.github.com> Co-authored-by: Clemens Brunner <clemens.brunner@gmail.com>
* MAINT: Tol * FIX: Fix for deprecation * FIX: One more
* apt-get -> apt * don't install+uninstall mayavi/pysurfer; don't build MPL from source * ignore quantities error * ignore nilearn error
* pin seaborn * touch tutorial
* MAINT: Updates for deprecations * FIX: Flake
…n manually. Signed-off-by: Mahdi Tanbakuchi <mehdi.kuchi@gmail.com>
Signed-off-by: Mahdi Tanbakuchi <mehdi.kuchi@gmail.com>
Signed-off-by: Mahdi Tanbakuchi <mehdi.kuchi@gmail.com>
Signed-off-by: Mahdi Tanbakuchi <mehdi.kuchi@gmail.com>
Member
Agreed and the merge conflicts are extensive now. Feel free to open a clean PR when you get a chance if you're still interested @mehdikuchi ! |
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Reference issue
TFR analysis with more flexibility #8380
What does this implement/fix?
The wavelet function is added to the time_frequency module
Additional information
The function accepts a callable with one input which specifies the length of the window to be used.
The resulting wavelet series can be used for analysis using the cwt function of the library.