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Releases: vitessce/vitessce

v3.9.6

26 Mar 13:44
3c87516

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Patch Changes

  • Define obsPoints.ng-annotations as a fileType, enabling users to specify Neuroglancer point annotations via the usual datasets part of the Vitessce configuration. Add logic for controlling segmentation and point layers via the existing layerControllerBeta UI, including coloring and filtering points via the featureList. (@vitessce/spatial-zarr, @vitessce/neuroglancer, @vitessce/example-configs) (#2420)

  • Use obsType from coordinationValues for pointLayer and spotLayer when available. (@vitessce/spatial-zarr, @vitessce/zarr, @vitessce/csv) (#2441)

  • Added legend to Neuroglancer view (@vitessce/neuroglancer, @vitessce/constants-internal) (#2435)

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v3.9.5

23 Feb 22:13
e55ecaf

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Patch Changes

  • Update docs site, primarily home page and examples page" (docs) (#2421)

  • Prioritize loading center bricks (before outer bricks) in the spatialAccelerated view. (@vitessce/spatial-accelerated) (#2417)

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v3.9.4

11 Feb 14:35
5bcf8d7

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Patch Changes

  • Move @vitessce/comparative subpackage from examples/ to packages/ in monorepo to ensure it is published to NPM. (@vitessce/comparative) (#2411)

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v3.9.3

11 Feb 12:34
ec88124

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Patch Changes

  • Adds comparative sub-package to export ControlledComparative and UncontrolledComparative components. (@vitessce/comparative) (#2393)

  • Add a default getRange implementation to use when loading SpatialData obsPoints. (@vitessce/spatial-zarr, @vitessce/zarr-utils) (#2409)

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v3.9.2

05 Feb 16:19
376ab6d

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Patch Changes

  • Add spatialdata blobs example dataset configuration. Improve support for non-tiled SpatialData points when they have a feature_index column mapping each point to an index in the corresponding SpatialData Table var.index column, e.g. to map points to gene indices. (@vitessce/spatial-zarr, @vitessce/spatial-beta, @vitessce/example-configs) (#2403)

  • Move informational subtitles below relevant views. (@vitessce/vit-s) (#2396)

  • Convert styles package to TypeScript. (@vitessce/styles) (#2400)

Versioned Sites

v3.9.1

27 Jan 17:02
0ff9f3b

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Patch Changes

  • Pre-initialize zipped zarr stores to improve loading performance and avoid losing JS context for multiplexing. (@vitessce/vit-s) (#2392)

  • Add spatialdata.zarr options for obsPoints to specify featureIndexColumn and mortonCodeColumn names. (@vitessce/spatial-zarr, @vitessce/example-configs, @vitessce/schemas) (#2394)

Versioned Sites

v3.9.0

16 Jan 15:12
71f17fb

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Minor Changes

  • Support loading SpatialData Points in a tiled manner, with features for filtering and coloring. (@vitessce/layer-controller-beta, @vitessce/spatial-zarr, @vitessce/spatial-beta) (#2286)

Versioned Sites

v3.8.13

14 Dec 22:12
bfb6754

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Patch Changes

  • Update GitHub Actions workflow permissions to support OIDC trusted publishing (second try). (@vitessce/all) (#2382)

Versioned Sites

v3.8.10

03 Dec 16:44
a4d1fe6

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Patch Changes

  • Enable min/max slider controls for legend. (@vitessce/scatterplot-embedding, @vitessce/heatmap, @vitessce/spatial, @vitessce/legend) (#2365)

  • Increase automatic scatterplot point size (@vitessce/scatterplot) (#2363)

  • Improvements to generateConfig to support Zarr stores containing recarrays (will skip rather than error) and to reduce network requests by passing the kind parameter to zarr.open. (@vitessce/launcher, @vitessce/config) (#2366)

Versioned Sites

v3.8.9

20 Nov 03:08
a1e4ffd

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Patch Changes

  • Support featureAggregationStrategy in scatterplot view. Perform aggregation prior to uint8 normalization. (@vitessce/scatterplot-embedding, @vitessce/utils) (#2335)

  • Fix VitessceGrid regression preventing resizing/moving views in the grid, introduced in v3.8.7. (@vitessce/vit-s) (#2337)

  • Preserve hidden selected gene in featureList when enableMultiSelect is true. (@vitessce/feature-list) (#2332)

Versioned Sites