* Fixing documentation inconsistency for PTO-Sim blocks (#1330)

* Fixing documentation inconsistency for PTO-Sim blocks

* Adding comments to nondimensional values for clarification

* update analytics implementation in docs re deprecation of analytics_id (#1342)

* Body block library update for bug fix #1346  (#1347)

* fix on pDis function call

* preliminary fix for issue #1288

* Update readAQWA.m (#1253)

* body mask fixes for #1346

* add warning when variable hydro turned on for drag or nonhydro bodies

* flex body - add missing mask lines, define h5 button callback

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Co-authored-by: jtgrasb <87095491+jtgrasb@users.noreply.github.com>
Co-authored-by: akeeste <akeeste@sandia.gov>

* BIMIO to read NEMO QTF output files and do plots

* Fixes the plotQTF function when multiple hydro strctures are i/p

* Makes the body indecies start from 0 not from 1 to match the rest of NEMOH-BIMIO inputs for multibodies

* Fixes the bug in the bodyClass for the QTFs and variable hydro (#1351)

* fixes the bug in the bodyClass for the QTFs and variable hydro

* fix QTF block issue - dont make it an atomic systme

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Co-authored-by: akeeste <akeeste@sandia.gov>

* Update source/functions/BEMIO/QTFs/triToFullMatrix.m

Co-authored-by: Adam Keester <72414466+akeeste@users.noreply.github.com>

* Update source/functions/BEMIO/QTFs/triToFullMatrix.m

Co-authored-by: Adam Keester <72414466+akeeste@users.noreply.github.com>

* Update wecSimTest.m

Co-authored-by: Adam Keester <72414466+akeeste@users.noreply.github.com>

* Update source/functions/BEMIO/QTFs/triToFullMatrix.m

Co-authored-by: Adam Keester <72414466+akeeste@users.noreply.github.com>

* Update source/functions/BEMIO/plotBEMIO.m

Co-authored-by: Adam Keester <72414466+akeeste@users.noreply.github.com>

* Update source/functions/BEMIO/QTFs/plotQTFs.m

Co-authored-by: Adam Keester <72414466+akeeste@users.noreply.github.com>

* Update source/functions/BEMIO/QTFs/plotQTFs.m

Co-authored-by: Adam Keester <72414466+akeeste@users.noreply.github.com>

---------

Co-authored-by: Jorge Leon <72461917+jleonqu@users.noreply.github.com>
Co-authored-by: Adam Keester <72414466+akeeste@users.noreply.github.com>
Co-authored-by: dforbush2 <dforbus@sandia.gov>
Co-authored-by: jtgrasb <87095491+jtgrasb@users.noreply.github.com>
Co-authored-by: akeeste <akeeste@sandia.gov>

update body library block mask to address #1346 on dev branch

Pull bugfixes #1369 and #1362 from main to dev

* Some path fixes for MoorDyn v2

* Adjusting how things are displayed in the command window

* Adjusting variables to camel case

* keeps only the rename, and the cmd display of non-hydro bodies

* test commit 1

* revert change in test commit 1

* Replaced while loops with for loops, and prints the non-hydro body details tot he cmd

---------

Co-authored-by: akeeste <akeeste@sandia.gov>

* cable tests

* update tension calc and add a tension test

* fix typo in wecSimTest.m

* adding bemio cleanup function

* impedance block drafts

* readWAMIT fix

* cleanup, fix plot dofs for function

* remove impedance blocks and function

* write cleaned file to new name

* drafts of IEC wave direction implementation, still need changes to slx and bodyClass

* directional wave spectra commit no tests no docs

* fix merge conflict initializeWecSim

* initializeWS and body class up until hydroForcePre

* merged bodyClass

* merge simulink library changes

* hopefully fixes bad PR merge

* variant subsystem fullDir fixed

* transpose irregular wave coeffs

* fixed some omissions for variable hydro

* transpose phase in irregWaveMorison to fix desal apps case

* tranpose phase in irregWave calculatio to solve Morison app issue

* adding iH indexing to listInfo and checkInputs to fix variableHydro Apps case.

* flex body library relinking

* typeNum fix for udf

* flex body lib linked to rigid body changes, responseClass matched to v61 PR

* variable hydro post processing align with v61 PR

* adding phase transpose for all wave cases

* phase transpose in elevationGrid calculation

* fix wave phase orientation in morison elements

* add back dirBins to irrExcitation inputs

* Fix merge issues

* Add full directional excitation block back in

* Resolve library issue and add spreadBins

* fix postProcessing bug in waveClass related to size

* fix bug when wave markers specified

* set body library to be 2020b

* Adding docs. Bear witness and learn, younglings

* fix initializeWecSim for visualization

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Co-authored-by: dforbush2 <dforbus@sandia.gov>
Co-authored-by: akeeste <akeeste@sandia.gov>

Co-authored-by: jleonqu <jleonqu@sandia.gov>

…to flex body (#1384)

* Add full directional wave block to flex body excitation

* adding waveCallBack mask function to flex body

* Update flex body to work with multiple wave trains and full directional waves

* Revert extra changes

---------

Co-authored-by: Forbush <dforbus@sandia.gov>

* update refernces to hydroforce in documentation

* initial setup

* variable hydro docs v1

* update variable hydro advanced feature

* add variable hydro to documentations application list

* variable hydro developer docs

* explain variable hydro flags used in wecsiminputfile

* hopefully fix bullet issue

* add compatibility section

* make compatibility a note

* revise user implementation section

* revise additional considerations section

* revise intro a bit

* update image path

* fix file type capitalization for linux docs build

* typo fix