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Updates of release_19.01#2

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ThanKarab merged 78 commits intomadgik:release_19.01from
galaxyproject:release_19.01
Apr 2, 2019
Merged

Updates of release_19.01#2
ThanKarab merged 78 commits intomadgik:release_19.01from
galaxyproject:release_19.01

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abretaud and others added 30 commits March 7, 2019 15:31
[18.05] Restrict loading of JSON files on the server via the workflow API to Galaxy admins
[18.09] Fix warning message formatting in sharing controller
The rename action works, the hide action fails.
Building this to fix
#7473.
`change_datatype` wasn't part of gxformat2, so this also requires
a new release of gxformat2 with galaxyproject/gxformat2#7
This fixes dataset being added to histories when the source
HDA is visible.
[19.01] Backport Fix post job actions for Database Operation tools, implement change_datatype for collection output
Use a relative output.publicPath to avoid 404 errors when serving with a url prefix
…is up with more improvements in the actual router.
Otherwise state inputs contain history datasets.
This is a bug that might result in non-deterministic tool module
behavior.
dannon and others added 29 commits March 21, 2019 21:09
whose child-workflow is included more than once.
Fixes #7261 and probably #6032
…ication

[19.01] Backport workflow output rectification
[19.01] Backport #7466: Don't display outputs that aren't going to be produced in workflow editor
[19.01] Backport fix saving imported subworkflows
[18.05] backport circleci testing
which will not strip safe HTML tags and attributes, which we use.

Also, restrict the possible values of `status` instead of trying to
escape it.
[19.01] Improve string escaping and changeset validation on toolshed
which will not strip safe HTML tags and attributes, which we use.

Also, restrict the possible values of `status` instead of trying to
escape it.
This will allow anyone with an up-to-date 19.01 server to run tests with multiple levels of subdirectories in the `test-data` directory.
We should only finalize collections up until the map over depth,
as indicated by the TODO that is now obsolete.
Fixes #5867 and probably
a bunch of other issues where workflows don't run to completion.
and expand to the messageLarge method
[19.01] Delay workflow step execution for discovered & mapped-over input
@ThanKarab ThanKarab merged commit 861f2e1 into madgik:release_19.01 Apr 2, 2019
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10 participants