Fix formatting in CONTRIBUTING.md

… import merge-related tests are at the top of the file.

SchemaView remote import bug fix prep: test reorganisation

Schemaview creature schema

Fix a couple of bugs where the wrong type is reported in an error message.
Cut down some needlessly verbose sorting code.

…ort_tests

Fix the remote import issue in SchemaViewer and a couple of misc minor bugs

Small linter cleanup

Python code fixes by ruff

Spelling exceptions

Fix incorrect YAML encoding, ignore intentionally corrupted files

…otebook

Fixup Monarch Schemaview notebook

generating URI to Path / str(Path) maps in __init__

- create error messages before raise exceptions
- simplify some if/else cascades
- fix variable naming convention violations

… easier debugging

schemaview.py: add get_string_type to retrieve typedef for strings

…ality

…value_parent_plurality

schemaview.py: deprecate `permissible_value_parent`, replace with `permissible_value_parents`

…ling various slot range functions'

…k_to_range_fns

schemaview.py: check for a valid slot def before calling a function

Bumps [coverage](https://github.com/nedbat/coveragepy) from 7.9.1 to 7.10.7.
- [Release notes](https://github.com/nedbat/coveragepy/releases)
- [Changelog](https://github.com/nedbat/coveragepy/blob/master/CHANGES.rst)
- [Commits](coveragepy/coveragepy@7.9.1...7.10.7)

---
updated-dependencies:
- dependency-name: coverage
  dependency-version: 7.10.7
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>

Bumps the dependencies group with 2 updates: [pyyaml](https://github.com/yaml/pyyaml) and [requests](https://github.com/psf/requests).


Updates `pyyaml` from 6.0.2 to 6.0.3
- [Release notes](https://github.com/yaml/pyyaml/releases)
- [Changelog](https://github.com/yaml/pyyaml/blob/6.0.3/CHANGES)
- [Commits](yaml/pyyaml@6.0.2...6.0.3)

Updates `requests` from 2.32.4 to 2.32.5
- [Release notes](https://github.com/psf/requests/releases)
- [Changelog](https://github.com/psf/requests/blob/main/HISTORY.md)
- [Commits](psf/requests@v2.32.4...v2.32.5)

---
updated-dependencies:
- dependency-name: pyyaml
  dependency-version: 6.0.3
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: dependencies
- dependency-name: requests
  dependency-version: 2.32.5
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: dependencies
...

Signed-off-by: dependabot[bot] <support@github.com>

Bumps [jsonschema](https://github.com/python-jsonschema/jsonschema) from 4.24.0 to 4.25.1.
- [Release notes](https://github.com/python-jsonschema/jsonschema/releases)
- [Changelog](https://github.com/python-jsonschema/jsonschema/blob/main/CHANGELOG.rst)
- [Commits](python-jsonschema/jsonschema@v4.24.0...v4.25.1)

---
updated-dependencies:
- dependency-name: jsonschema
  dependency-version: 4.25.1
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>

Bumps [curies](https://github.com/biopragmatics/curies) from 0.10.19 to 0.10.23.
- [Release notes](https://github.com/biopragmatics/curies/releases)
- [Commits](biopragmatics/curies@v0.10.19...v0.10.23)

---
updated-dependencies:
- dependency-name: curies
  dependency-version: 0.10.23
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>

…odule_name

module_name parameter for compile_python resolves linkml#2903

…e (filter-repo)

This is part of the monorepo migration to uv-workspace structure.
Moves the main linkml package source code to its proper location.

Moves all linkml-specific tests to the new monorepo structure.
Runtime tests remain in tests/linkml_runtime/ for next step.

Moves runtime tests from tests/linkml_runtime/ to the package-specific
tests directory. Removes the now-empty root tests directory.

Moves runtime source code from packages/linkml_runtime/* to
packages/linkml_runtime/src/linkml/runtime/* following the
proper package structure for the monorepo.

Move from src/linkml/runtime to src/linkml_runtime to maintain
the linkml_runtime import path and avoid breaking changes.

- Update monorepo-cleanup.sh to use correct src/linkml_runtime path
- Add packages/linkml/pyproject.toml with workspace configuration
- Add packages/linkml/README.md
- Configure hatchling build targets for both packages
- Workspace now supports 'uv sync' and individual package builds

Updated test_notebooks.py to use correct relative path to notebooks
directory from the new monorepo location (packages/linkml/tests).