✅ Default Genomes

  • CM334_v1.55
    Reference genome of Criollo de Morelos 334, a Mexican pepper landrace.
    Widely used as a foundational genome in pepper genetics.
    Source: EnsemblPlants

  • Dempsey_v1.0
    Chromosome-scale assembly of the bell-type sweet pepper cultivar Dempsey,
    extensively used for pan-genome synteny comparisons.
    Source: BioinformaticsLab

  • Zhangshugang
    Pepper accession included in Capsicum annuum pan-genome studies;
    useful for structural and diversity analyses.
    Source: FeiBioinfoLab

  • Zunla-1_v3.0
    Improved version of the early Chinese pepper genome Zunla-1,
    frequently referenced for comparative genomics and trait mapping.
    Source: BioinformaticsLab

📦 Additional Genomes

These genomes can be selected as part of the custom projects. They are also pre-computed for demo data set.

  • Takanotsume_v1.2
    Japanese chili pepper landrace.
    Source: PlantGarden

  • UCD10X_v1.1
    Pepper genome hosted via PlantGarden resources.
    Source: PepperBase

  • PepperBase
    Pan-genome database resource for Capsicum species.
    Source: PepperBase

  • Glabriusculum_Chiltepin_v2.0
    Wild progenitor Capsicum annuum var. glabriusculum (Chiltepin),
    important for evolutionary and domestication studies.
    Source: PlantGarden

We can easily integrate more genomes, as long as we have genome DNA sequence and GFF3 annotation file. Contact us if there is some public genome you are interested in.