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[MRG] MAINT deprecate explicit indices parameter to CV generators, even if True#1

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[MRG] MAINT deprecate explicit indices parameter to CV generators, even if True#1
jnothman wants to merge 1619 commits intomasterfrom
cv_deprecate_indices2

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Fixes up some gaps in scikit-learn#2334

glouppe and others added 30 commits August 13, 2013 06:32
[DOC] Remove that RBM's are not implemented yet
FIX: release reference to X in _tree.splitter
* added extra checks for custom vocab in CountVectorizer
* added test for custom vocab to check fauly vocabs

Fixes scikit-learn#2357.
- Added 'cosine_distances' function to sklearn.metrics.pairwise.
- Added 'cosine' as metric in 'pairwise_distances' function.
- Corrected doc string of same function, because all metrics based on
the 'manhattan_distances' function (i.e. 'cityblock', 'l1', and
'manhattan') do currently NOT support sparse matrices.
- Added corresponding corresponding unit test.
These warnings are issued practically always when using
frequency-valued or boolean data.

Switched to a stable sort to get reproducible results.
Cosine distance metric for sparse matrices
[MRG] remove warnings in univariate feature selection
glouppe and others added 23 commits September 9, 2013 08:38
DOC: Update pyamg site and fix a typo.
MRG: DOC: Simpler cross-validation iterator doc
* Rewritten for efficiency and neatness. Note the handling of multilabel-sequences format by binarizing is in response to benchmarks.
* Also fixed some warning handling in tests
[MRG] faster, flatter precision_recall_fscore_support
@jnothman jnothman closed this Sep 12, 2013
jnothman pushed a commit that referenced this pull request Apr 15, 2015
jnothman pushed a commit that referenced this pull request Nov 20, 2016
Unicode docstrings are not handled correctly on Python 2.x
jnothman pushed a commit that referenced this pull request Nov 20, 2016
ENH : simplify handling of Yield section
jnothman pushed a commit that referenced this pull request Dec 11, 2016
…scikit-learn#7838)

* initial commit for return_std

* initial commit for return_std

* adding tests, examples, ARD predict_std

* adding tests, examples, ARD predict_std

* a smidge more documentation

* a smidge more documentation

* Missed a few PEP8 issues

* Changing predict_std to return_std #1

* Changing predict_std to return_std #2

* Changing predict_std to return_std #3

* Changing predict_std to return_std final

* adding better plots via polynomial regression

* trying to fix flake error

* fix to ARD plotting issue

* fixing some flakes

* Two blank lines part 1

* Two blank lines part 2

* More newlines!

* Even more newlines

* adding info to the doc string for the two plot files

* Rephrasing "polynomial" for Bayesian Ridge Regression

* Updating "polynomia" for ARD

* Adding more formal references

* Another asked-for improvement to doc string.

* Fixing flake8 errors

* Cleaning up the tests a smidge.

* A few more flakes

* requested fixes from Andy

* Mini bug fix

* Final pep8 fix

* pep8 fix round 2

* Fix beta_ to alpha_ in the comments
jnothman pushed a commit that referenced this pull request Jul 18, 2018
* Add averaging option to AMI and NMI

Leave current behavior unchanged

* Flake8 fixes

* Incorporate tests of means for AMI and NMI

* Add note about `average_method` in NMI

* Update docs from AMI, NMI changes (#1)

* Correct the NMI and AMI descriptions in docs

* Update docstrings due to averaging changes

- V-measure
- Homogeneity
- Completeness
- NMI
- AMI

* Update documentation and remove nose tests (#2)

* Update v0.20.rst

* Update test_supervised.py

* Update clustering.rst

* Fix multiple spaces after operator

* Rename all arguments

* No more arbitrary values!

* Improve handling of floating-point imprecision

* Clearly state when the change occurs

* Update AMI/NMI docs

* Update v0.20.rst

* Catch FutureWarnings in AMI and NMI
jnothman pushed a commit that referenced this pull request Jun 26, 2019
Replacing the Pipeline changes by ResampledTrainer
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