fix(task): execute monorepo subdirectory prepare steps from root by jdx · Pull Request #8291 · jdx/mise

jdx · 2026-02-21T18:37:23Z

Summary

Fixes monorepo subdirectory prepare steps being skipped when running mise run //subdir:task from the root (discussions/6564#discussioncomment-15853930)
Moves prepare execution to after task resolution so subdirectory config files discovered during get_task_lists() are passed to PrepareEngine
Extracts build_provider() helper in PrepareEngine and adds add_config_files() method for injecting additional config file providers

Test plan

mise run build compiles successfully
mise run test:e2e test_prepare passes (all existing + new test)
New e2e test: sets up monorepo with subdirectory prepare provider, runs mise run //subapp:check from root, asserts prepare step executed before task

🤖 Generated with Claude Code

Note

Medium Risk
Changes task execution ordering and expands which prepare providers can run for a mise run, which could affect dependency prep behavior in multi-config/monorepo setups.

Overview
Fixes mise run //subdir:task in monorepos so auto-enabled prepare steps from the referenced subdirectory config are executed.

This moves auto-prepare execution in run to after task resolution and injects the resolved tasks’ config files into PrepareEngine via a new add_config_files() path (with provider construction refactored into build_provider()). Adds an e2e regression test that asserts subdirectory prepare runs when invoking //subapp:check from the repo root.

^{Written by Cursor Bugbot for commit f13905e. This will update automatically on new commits. Configure here.}

When running `mise run //subdir:task` from the monorepo root, prepare steps defined in the subdirectory config were skipped because prepare ran before task resolution. Move prepare to run after `get_task_lists()` so subdirectory config files discovered during task resolution can be passed to the PrepareEngine. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

gemini-code-assist · 2026-02-21T18:37:39Z

Summary of Changes

Hello @jdx, I'm Gemini Code Assist¹! I'm currently reviewing this pull request and will post my feedback shortly. In the meantime, here's a summary to help you and other reviewers quickly get up to speed!

This pull request addresses a critical bug in mise where prepare steps for monorepo subdirectories were not being executed when tasks were run from the root. The solution involves reordering the prepare step execution to occur after task resolution, enabling the system to correctly identify and apply prepare configurations from subdirectories. Additionally, the PrepareEngine has been refactored to support this new workflow, improving its ability to handle dynamic configuration sources.

Highlights

Monorepo Prepare Step Fix: Resolved an issue where mise run //subdir:task from the root of a monorepo would skip prepare steps defined in the subdirectory's configuration.
Prepare Execution Timing: Relocated the execution of auto-enabled prepare steps to occur after task resolution, allowing the system to discover and incorporate prepare providers from monorepo subdirectory configurations.
PrepareEngine Enhancements: Introduced a new build_provider() helper function to centralize provider instantiation logic and added an add_config_files() method to PrepareEngine for dynamically injecting additional configuration files, specifically for monorepo subdirectories.

Changelog

e2e/cli/test_prepare
- Added a new end-to-end test case to verify that monorepo subdirectory prepare steps are correctly executed when running tasks from the root.
src/cli/run.rs
- Moved the logic for running auto-enabled prepare steps to a later stage in the run command's execution flow.
- Integrated the PrepareEngine::add_config_files method to include prepare configurations from resolved monorepo subdirectory tasks.
src/prepare/engine.rs
- Extracted the provider instantiation logic into a new private helper function build_provider.
- Implemented a public method add_config_files to allow external injection of additional ConfigFile instances for prepare provider discovery.

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gemini-code-assist

Code Review

This pull request addresses an issue where prepare steps in monorepo subdirectories were skipped when running tasks from the root. The solution involves moving the prepare execution phase to after task resolution and injecting the configuration files of the resolved tasks into the PrepareEngine. Overall, the changes are well-structured and include a comprehensive end-to-end test. My feedback focuses on minor performance optimizations regarding the deduplication of configuration files and the use of more efficient data structures for tracking disabled providers.

gemini-code-assist · 2026-02-21T18:42:31Z

src/cli/run.rs

+            let subdir_configs: Vec<_> = task_list
+                .iter()
+                .filter_map(|task| task.cf.clone())
+                .collect();


Resolved tasks in a monorepo often share the same configuration file. Deduplicating subdir_configs before passing them to the PrepareEngine prevents redundant processing of the same prepare configuration.

Suggested change

let subdir_configs: Vec<_> = task_list

.iter()

.filter_map(|task| task.cf.clone())

.collect();

let subdir_configs: Vec<_> = task_list

.iter() .filter_map(|task| task.cf.clone())

.unique_by(|cf| cf.get_path().to_path_buf())

.collect();

gemini-code-assist · 2026-02-21T18:42:31Z

src/prepare/engine.rs

+            self.providers.iter().map(|p| p.id().to_string()).collect();
+        let mut disabled: Vec<String> = vec![];
+
+        for cf in config_files {


Using a HashSet for the disabled list is more efficient than a Vec for the subsequent filtering step, as it provides $O(1)$ lookup complexity.

Suggested change

for cf in config_files {

let mut disabled: HashSet<String> = HashSet::new();

gemini-code-assist · 2026-02-21T18:42:31Z

src/prepare/engine.rs

+        }
+    }
+
    /// List all discovered providers


With disabled as a HashSet, we can perform an efficient lookup using the provider ID directly, avoiding the allocation of a new String for every comparison in the retain closure.

Suggested change

/// List all discovered providers

.retain(|p| !disabled.contains(p.id()));

Copilot

Pull request overview

This PR fixes an issue where monorepo subdirectory prepare steps were being skipped when running tasks from the root directory using the //subdir:task syntax. The fix moves prepare step execution to occur after task resolution, allowing the PrepareEngine to discover and include prepare providers from subdirectory config files.

Changes:

Refactored PrepareEngine to extract provider building logic into a helper method and added add_config_files() for injecting additional config file providers
Moved prepare step execution in Run command to after task resolution so subdirectory configs are available
Added e2e test validating monorepo subdirectory prepare steps execute correctly

Reviewed changes

Copilot reviewed 3 out of 3 changed files in this pull request and generated 2 comments.

File	Description
src/prepare/engine.rs	Extracts `build_provider()` helper and adds `add_config_files()` method to support injecting subdirectory config providers
src/cli/run.rs	Moves prepare execution after task resolution and injects subdirectory config files into PrepareEngine
e2e/cli/test_prepare	Adds test case for monorepo subdirectory prepare steps when running `//subdir:task` from root

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Copilot · 2026-02-21T18:43:26Z

src/prepare/engine.rs

+        let mut seen_ids: HashSet<String> =
+            self.providers.iter().map(|p| p.id().to_string()).collect();


The seen_ids HashSet is initialized from existing providers but doesn't check for duplicates within the new config files being added. If the same provider ID appears in multiple config files passed to this method, only the first occurrence will be added. Consider documenting this behavior or adding validation to warn about duplicate provider IDs within the input config files.

Copilot · 2026-02-21T18:43:26Z

src/cli/run.rs

+            let subdir_configs: Vec<_> = task_list
+                .iter()
+                .filter_map(|task| task.cf.clone())
+                .collect();


The cloning of task.cf values and collection into subdir_configs could benefit from a comment explaining why we're collecting config files from tasks. While the prepare execution comment above provides context, documenting this specific collection step would clarify why we need these config files and what they represent (subdirectory configs from resolved tasks).

jdx · 2026-02-21T18:50:02Z

bugbot run

cursor

✅ Bugbot reviewed your changes and found no new issues!

Comment @cursor review or bugbot run to trigger another review on this PR

github-actions · 2026-02-21T19:03:45Z

Hyperfine Performance

`mise x -- echo`

Command	Mean [ms]	Min [ms]	Max [ms]	Relative
`mise-2026.2.17 x -- echo`	21.9 ± 0.3	21.4	24.3	1.00
`mise x -- echo`	22.8 ± 1.9	22.1	61.6	1.04 ± 0.09

`mise env`

Command	Mean [ms]	Min [ms]	Max [ms]	Relative
`mise-2026.2.17 env`	21.3 ± 0.5	20.8	31.9	1.00
`mise env`	21.5 ± 0.4	20.8	27.2	1.01 ± 0.03

`mise hook-env`

Command	Mean [ms]	Min [ms]	Max [ms]	Relative
`mise-2026.2.17 hook-env`	22.0 ± 0.5	21.4	27.9	1.00
`mise hook-env`	22.1 ± 0.2	21.6	24.1	1.01 ± 0.03

`mise ls`

Command	Mean [ms]	Min [ms]	Max [ms]	Relative
`mise-2026.2.17 ls`	19.6 ± 0.2	19.2	21.0	1.00
`mise ls`	19.7 ± 0.4	19.2	26.8	1.00 ± 0.03

`xtasks/test/perf`

Command	mise-2026.2.17	mise	Variance
install (cached)	123ms	122ms	+0%
ls (cached)	74ms	74ms	+0%
bin-paths (cached)	79ms	79ms	+0%
task-ls (cached)	802ms	796ms	+0%

@jdx

### 🚀 Features - **(install)** auto-lock all platforms after tool installation by @jdx in [#8277](#8277) ### 🐛 Bug Fixes - **(config)** respect --yes flag for config trust prompts by @jdx in [#8288](#8288) - **(exec)** strip shims from PATH on Unix to prevent infinite recursion by @jdx in [#8276](#8276) - **(install)** validate --locked before --dry-run short-circuit by @altendky in [#8290](#8290) - **(release)** refresh PATH after mise up in release-plz by @jdx in [#8292](#8292) - **(schema)** replace unevaluatedProperties with additionalProperties by @jdx in [#8285](#8285) - **(task)** avoid duplicated stderr on task failure in replacing mode by @jdx in [#8275](#8275) - **(task)** use process groups to kill child process trees on Unix by @jdx in [#8279](#8279) - **(task)** run depends_post tasks even when parent task fails by @jdx in [#8274](#8274) - **(task)** suggest similar commands when mistyping a CLI subcommand by @jdx in [#8286](#8286) - **(task)** execute monorepo subdirectory prepare steps from root by @jdx in [#8291](#8291) - **(upgrade)** don't force-reinstall already installed versions by @jdx in [#8282](#8282) - **(watch)** restore terminal state after watchexec exits by @jdx in [#8273](#8273) ### 📚 Documentation - clarify that MISE_CEILING_PATHS excludes the ceiling directory itself by @jdx in [#8283](#8283) ### Chore - replace gen-release-notes script with communique by @jdx in [#8289](#8289) ### New Contributors - @altendky made their first contribution in [#8290](#8290) ## 📦 Aqua Registry Updates #### New Packages (4) - [`Skarlso/crd-to-sample-yaml`](https://github.com/Skarlso/crd-to-sample-yaml) - [`kunobi-ninja/kunobi-releases`](https://github.com/kunobi-ninja/kunobi-releases) - [`swanysimon/markdownlint-rs`](https://github.com/swanysimon/markdownlint-rs) - [`tmux/tmux-builds`](https://github.com/tmux/tmux-builds) #### Updated Packages (2) - [`firecow/gitlab-ci-local`](https://github.com/firecow/gitlab-ci-local) - [`k1LoW/runn`](https://github.com/k1LoW/runn)

@jdx

## [2026.2.18](https://github.com/jdx/mise/compare/v2026.2.17..v2026.2.18) - 2026-02-21 ### 🚀 Features - **(install)** auto-lock all platforms after tool installation by @jdx in [#8277](jdx/mise#8277) ### 🐛 Bug Fixes - **(config)** respect --yes flag for config trust prompts by @jdx in [#8288](jdx/mise#8288) - **(exec)** strip shims from PATH on Unix to prevent infinite recursion by @jdx in [#8276](jdx/mise#8276) - **(install)** validate --locked before --dry-run short-circuit by @altendky in [#8290](jdx/mise#8290) - **(release)** refresh PATH after mise up in release-plz by @jdx in [#8292](jdx/mise#8292) - **(schema)** replace unevaluatedProperties with additionalProperties by @jdx in [#8285](jdx/mise#8285) - **(task)** avoid duplicated stderr on task failure in replacing mode by @jdx in [#8275](jdx/mise#8275) - **(task)** use process groups to kill child process trees on Unix by @jdx in [#8279](jdx/mise#8279) - **(task)** run depends_post tasks even when parent task fails by @jdx in [#8274](jdx/mise#8274) - **(task)** suggest similar commands when mistyping a CLI subcommand by @jdx in [#8286](jdx/mise#8286) - **(task)** execute monorepo subdirectory prepare steps from root by @jdx in [#8291](jdx/mise#8291) - **(upgrade)** don't force-reinstall already installed versions by @jdx in [#8282](jdx/mise#8282) - **(watch)** restore terminal state after watchexec exits by @jdx in [#8273](jdx/mise#8273) ### 📚 Documentation - clarify that MISE_CEILING_PATHS excludes the ceiling directory itself by @jdx in [#8283](jdx/mise#8283) ### Chore - replace gen-release-notes script with communique by @jdx in [#8289](jdx/mise#8289) ### New Contributors - @altendky made their first contribution in [#8290](jdx/mise#8290) ### 📦 Aqua Registry Updates #### New Packages (4) - [`Skarlso/crd-to-sample-yaml`](https://github.com/Skarlso/crd-to-sample-yaml) - [`kunobi-ninja/kunobi-releases`](https://github.com/kunobi-ninja/kunobi-releases) - [`swanysimon/markdownlint-rs`](https://github.com/swanysimon/markdownlint-rs) - [`tmux/tmux-builds`](https://github.com/tmux/tmux-builds) #### Updated Packages (2) - [`firecow/gitlab-ci-local`](https://github.com/firecow/gitlab-ci-local) - [`k1LoW/runn`](https://github.com/k1LoW/runn) ## [2026.2.17](https://github.com/jdx/mise/compare/v2026.2.16..v2026.2.17) - 2026-02-19 ### 🚀 Features - **(prepare)** update mtime of outputs after command is run by @halms in [#8243](jdx/mise#8243) ### 🐛 Bug Fixes - **(install)** use backend bin paths for per-tool postinstall hooks by @jdx in [#8234](jdx/mise#8234) - **(use)** write to config.toml instead of config.local.toml by @jdx in [#8240](jdx/mise#8240) - default legacy .mise.backend installs to non-explicit by @jean-humann in [#8245](jdx/mise#8245) ### 🚜 Refactor - **(config)** consolidate flat task_* settings into nested task.* by @jdx in [#8239](jdx/mise#8239) ### Chore - **(prepare)** refactor common code into ProviderBase by @halms in [#8246](jdx/mise#8246) ### 📦 Aqua Registry Updates #### Updated Packages (1) - [`namespacelabs/foundation/nsc`](https://github.com/namespacelabs/foundation/nsc)

This updates the tests introduced in: jdx#8291 to demonstrate a case where prepare steps are not properly run.

…#8291) ## Summary - **Fixes** monorepo subdirectory prepare steps being skipped when running `mise run //subdir:task` from the root ([discussions/6564#discussioncomment-15853930](jdx#6564 (comment))) - Moves prepare execution to after task resolution so subdirectory config files discovered during `get_task_lists()` are passed to `PrepareEngine` - Extracts `build_provider()` helper in `PrepareEngine` and adds `add_config_files()` method for injecting additional config file providers ## Test plan - [x] `mise run build` compiles successfully - [x] `mise run test:e2e test_prepare` passes (all existing + new test) - [x] New e2e test: sets up monorepo with subdirectory prepare provider, runs `mise run //subapp:check` from root, asserts prepare step executed before task 🤖 Generated with [Claude Code](https://claude.com/claude-code)  --- > [!NOTE] > **Medium Risk** > Changes task execution ordering and expands which `prepare` providers can run for a `mise run`, which could affect dependency prep behavior in multi-config/monorepo setups. > > **Overview** > Fixes `mise run //subdir:task` in monorepos so auto-enabled `prepare` steps from the referenced subdirectory config are executed. > > This moves auto-`prepare` execution in `run` to *after* task resolution and injects the resolved tasks’ config files into `PrepareEngine` via a new `add_config_files()` path (with provider construction refactored into `build_provider()`). Adds an e2e regression test that asserts subdirectory `prepare` runs when invoking `//subapp:check` from the repo root. > > <sup>Written by [Cursor Bugbot](https://cursor.com/dashboard?tab=bugbot) for commit f13905e. This will update automatically on new commits. Configure [here](https://cursor.com/dashboard?tab=bugbot).</sup>  --------- Co-authored-by: Claude Opus 4.6 <noreply@anthropic.com> Co-authored-by: autofix-ci[bot] <114827586+autofix-ci[bot]@users.noreply.github.com>

@jdx

### 🚀 Features - **(install)** auto-lock all platforms after tool installation by @jdx in [jdx#8277](jdx#8277) ### 🐛 Bug Fixes - **(config)** respect --yes flag for config trust prompts by @jdx in [jdx#8288](jdx#8288) - **(exec)** strip shims from PATH on Unix to prevent infinite recursion by @jdx in [jdx#8276](jdx#8276) - **(install)** validate --locked before --dry-run short-circuit by @altendky in [jdx#8290](jdx#8290) - **(release)** refresh PATH after mise up in release-plz by @jdx in [jdx#8292](jdx#8292) - **(schema)** replace unevaluatedProperties with additionalProperties by @jdx in [jdx#8285](jdx#8285) - **(task)** avoid duplicated stderr on task failure in replacing mode by @jdx in [jdx#8275](jdx#8275) - **(task)** use process groups to kill child process trees on Unix by @jdx in [jdx#8279](jdx#8279) - **(task)** run depends_post tasks even when parent task fails by @jdx in [jdx#8274](jdx#8274) - **(task)** suggest similar commands when mistyping a CLI subcommand by @jdx in [jdx#8286](jdx#8286) - **(task)** execute monorepo subdirectory prepare steps from root by @jdx in [jdx#8291](jdx#8291) - **(upgrade)** don't force-reinstall already installed versions by @jdx in [jdx#8282](jdx#8282) - **(watch)** restore terminal state after watchexec exits by @jdx in [jdx#8273](jdx#8273) ### 📚 Documentation - clarify that MISE_CEILING_PATHS excludes the ceiling directory itself by @jdx in [jdx#8283](jdx#8283) ### Chore - replace gen-release-notes script with communique by @jdx in [jdx#8289](jdx#8289) ### New Contributors - @altendky made their first contribution in [jdx#8290](jdx#8290) ## 📦 Aqua Registry Updates #### New Packages (4) - [`Skarlso/crd-to-sample-yaml`](https://github.com/Skarlso/crd-to-sample-yaml) - [`kunobi-ninja/kunobi-releases`](https://github.com/kunobi-ninja/kunobi-releases) - [`swanysimon/markdownlint-rs`](https://github.com/swanysimon/markdownlint-rs) - [`tmux/tmux-builds`](https://github.com/tmux/tmux-builds) #### Updated Packages (2) - [`firecow/gitlab-ci-local`](https://github.com/firecow/gitlab-ci-local) - [`k1LoW/runn`](https://github.com/k1LoW/runn)

Copilot AI review requested due to automatic review settings February 21, 2026 18:37

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f13905e

jdx changed the title ~~fix(run): execute monorepo subdirectory prepare steps from root~~ fix(task): execute monorepo subdirectory prepare steps from root Feb 21, 2026

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jdx enabled auto-merge (squash) February 21, 2026 19:00

jdx merged commit 76a5fb3 into main Feb 21, 2026
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mise-en-dev mentioned this pull request Feb 21, 2026

chore: release 2026.2.18 #8259

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mise 2026.2.18 Homebrew/homebrew-core#268760

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NfNitLoop added a commit to NfNitLoop/mise that referenced this pull request Feb 25, 2026

Update integration test to show bug.

4b462b6

This updates the tests introduced in: jdx#8291 to demonstrate a case where prepare steps are not properly run.

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fix(task): execute monorepo subdirectory prepare steps from root#8291

fix(task): execute monorepo subdirectory prepare steps from root#8291
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fix/monorepo-prepare-subdirectory

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	for cf in config_files {
	let mut disabled: HashSet<String> = HashSet::new();

	/// List all discovered providers
	.retain(\|p\| !disabled.contains(p.id()));

		let mut seen_ids: HashSet<String> =
		self.providers.iter().map(\|p\| p.id().to_string()).collect();

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jdx commented Feb 21, 2026 •

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