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CoreNEURON: reduce memory usage in report initialization#1776
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iomaganaris
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matz-e
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To test your PR, use the following on BlueBrain5: unset MODULEPATH
. /gpfs/bbp.cscs.ch/ssd/apps/bsd/pulls/1776/config/modules.sh
module load unstablePlease test the following updated modules:
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pramodk
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heerener
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CoreNEURON: reduce memory usage in report initialization (#1776) Recipe changes to combine coreneuron into NEURON (#1777) * Bring coreneuron recipe options into neuron for coreneuron merge * remove dependency with coreneuron when neuron>=9.0 or develop * coreneuron variant is on by default in neuron * coreneuron mechanism library should always have different name than libcorenrnmech.so as it's now part of NEURON installation * do not add arch specific opt flags with +debug * Automatically bring coreneuron build_type=Debug when neuron+debug is used. This will simplify logic in blueconfig CI where we don't have to explicitly specify coreneuron dependency (especially as we have merged neuron and coreneuron) * Find "right" nrnivmodl-core binary for neurodamus building See relevant PR: neuronsimulator/nrn#2055 Deploy NEURON's upcoming 9.0a release (#1781) * Updated model-neocortex packages with latest 1.10 tag * add nmodl 0.5.a * remove coreneuron packages Co-authored-by: Ioannis Magkanaris <iomagkanaris@gmail.com> Co-authored-by: Matthias Wolf <matthias.wolf@epfl.ch> Update NEURON version (#1792) - Create NEURON version 9.0.a2 that includes bug fixes [Core]NEURON 8.2.2 (#1802) coreneuron: so long, and thanks for the fish. Coreneuron has been folded into neuRon and should not be referred to as a standalone package any more. Add py-sympy dependency at neuron package level newer spack doesn't seem to propogate python package dependencies (as PYTHONPATH) during build phase. neuron: omitted link flag for Caliper
heerener
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CoreNEURON: reduce memory usage in report initialization (#1776) Recipe changes to combine coreneuron into NEURON (#1777) * Bring coreneuron recipe options into neuron for coreneuron merge * remove dependency with coreneuron when neuron>=9.0 or develop * coreneuron variant is on by default in neuron * coreneuron mechanism library should always have different name than libcorenrnmech.so as it's now part of NEURON installation * do not add arch specific opt flags with +debug * Automatically bring coreneuron build_type=Debug when neuron+debug is used. This will simplify logic in blueconfig CI where we don't have to explicitly specify coreneuron dependency (especially as we have merged neuron and coreneuron) * Find "right" nrnivmodl-core binary for neurodamus building See relevant PR: neuronsimulator/nrn#2055 Deploy NEURON's upcoming 9.0a release (#1781) * Updated model-neocortex packages with latest 1.10 tag * add nmodl 0.5.a * remove coreneuron packages Co-authored-by: Ioannis Magkanaris <iomagkanaris@gmail.com> Co-authored-by: Matthias Wolf <matthias.wolf@epfl.ch> Update NEURON version (#1792) - Create NEURON version 9.0.a2 that includes bug fixes [Core]NEURON 8.2.2 (#1802) coreneuron: so long, and thanks for the fish. Coreneuron has been folded into neuRon and should not be referred to as a standalone package any more. Add py-sympy dependency at neuron package level newer spack doesn't seem to propogate python package dependencies (as PYTHONPATH) during build phase. neuron: omitted link flag for Caliper
matz-e
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Jan 25, 2023
CoreNEURON: reduce memory usage in report initialization (#1776) Recipe changes to combine coreneuron into NEURON (#1777) * Bring coreneuron recipe options into neuron for coreneuron merge * remove dependency with coreneuron when neuron>=9.0 or develop * coreneuron variant is on by default in neuron * coreneuron mechanism library should always have different name than libcorenrnmech.so as it's now part of NEURON installation * do not add arch specific opt flags with +debug * Automatically bring coreneuron build_type=Debug when neuron+debug is used. This will simplify logic in blueconfig CI where we don't have to explicitly specify coreneuron dependency (especially as we have merged neuron and coreneuron) * Find "right" nrnivmodl-core binary for neurodamus building See relevant PR: neuronsimulator/nrn#2055 Deploy NEURON's upcoming 9.0a release (#1781) * Updated model-neocortex packages with latest 1.10 tag * add nmodl 0.5.a * remove coreneuron packages Co-authored-by: Ioannis Magkanaris <iomagkanaris@gmail.com> Co-authored-by: Matthias Wolf <matthias.wolf@epfl.ch> Update NEURON version (#1792) - Create NEURON version 9.0.a2 that includes bug fixes [Core]NEURON 8.2.2 (#1802) coreneuron: so long, and thanks for the fish. Coreneuron has been folded into neuRon and should not be referred to as a standalone package any more. Add py-sympy dependency at neuron package level newer spack doesn't seem to propogate python package dependencies (as PYTHONPATH) during build phase. neuron: omitted link flag for Caliper
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