Publications

You can find my full list of articles on my Google Scholar profile.

^ = co-first author

Selected Publications

sCellST predicts single-cell gene expression from H&E images, Loïc Chadoutaud, Marvin Lerousseau, Daniel Herrero-Saboya, Julian Ostermaier, Jacqueline Fontugne, Emmanuel Barillot, Thomas Walter, 2025, Nature Communications
Transmorph: a unifying computational framework for modular single-cell RNA-seq data integration, Aziz Fouché, Loïc Chadoutaud, Olivier Delattre, Andrei Zinovyev, 2023, NAR Genomics and Bioinformatics

Selected Preprints

LEMON: a foundation model for nuclear morphology in Computational Pathology, Loïc Chadoutaud^, Alice Blondel^, Hanah Fehki, Jacqueline Fontugne, Emmanuel Barillot, Thomas Walter, 2026
HEDeST: An Integrative Approach to Enhance Spatial Transcriptomic Deconvolution with Histology, Luca Gortana, Loïc Chadoutaud, Raphaël Bourgade, Emmanuel Barillot, Thomas Walter, 2025