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fix: Inconsistent Linting Output Formatting#3064

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johanneskoester merged 1 commit intosnakemake:mainfrom
Kleinjohann:fix/inconsistent_linting_output_formatting
Sep 5, 2024
Merged

fix: Inconsistent Linting Output Formatting#3064
johanneskoester merged 1 commit intosnakemake:mainfrom
Kleinjohann:fix/inconsistent_linting_output_formatting

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@Kleinjohann Kleinjohann commented Sep 2, 2024 •
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While writing a parser for the output of snakemake --lint, I noticed that the output formatting is not always consistent. The hints usually end in Also see:\n<topical link>\n, however, for some, there are no links to be displayed, and then they end in Also see:\n\n.
This can be confusing to read depending on the context and it complicates parsing the linter output by adding stray newlines.

I fixed this by removing Also see:\n from the output if there are no links to display.

QC

No changes to tests and docs, let me know if you deem this necessary.

  • The PR contains a test case for the changes or the changes are already covered by an existing test case.
  • The documentation (docs/) is updated to reflect the changes or this is not necessary (e.g. if the change does neither modify the language nor the behavior or functionalities of Snakemake).

Summary by CodeRabbit

  • New Features
    • Improved string representation for better clarity and readability in output.
    • Conditional display of links in the output format to avoid unnecessary blank lines.

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coderabbitai bot commented Sep 2, 2024 •
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Walkthrough

The changes involve an update to the __str__ method of a class in the snakemake/linting/__init__.py file. The method now includes a type hint indicating it returns a string and has been refactored for improved readability. The construction of the output string has been modified to conditionally include a links section, optimizing the format by avoiding unnecessary blank lines.

Changes

Files Change Summary
snakemake/linting/init.py Modified __str__ method in UnknownClass to include a return type hint and improved string construction logic.

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sonarqubecloud bot commented Sep 2, 2024

Quality Gate Passed Quality Gate passed

Issues
0 New issues
0 Accepted issues

Measures
0 Security Hotspots
0.0% Coverage on New Code
0.0% Duplication on New Code

See analysis details on SonarCloud

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Actionable comments posted: 0

Review details

Configuration used: CodeRabbit UI
Review profile: CHILL

Commits

Files that changed from the base of the PR and between f955478 and 7b4a005.

Files selected for processing (1)
  • snakemake/linting/init.py (1 hunks)
Additional context used
Path-based instructions (1)
snakemake/linting/__init__.py (1)

Pattern **/*.py: Do not try to improve formatting.
Do not suggest type annotations for functions that are defined inside of functions or methods.
Do not suggest type annotation of the self argument of methods.
Do not suggest type annotation of the cls argument of classmethods.
Do not suggest return type annotation if a function or method does not contain a return statement.

Additional comments not posted (1)
snakemake/linting/__init__.py (1)

74-86: LGTM!

The refactoring of the __str__ method in the Lint class looks good:

  • The return type annotation -> str is correct and follows the additional instructions.
  • The refactoring improves the readability and maintainability of the method by building the output string in a more structured manner.
  • The conditional appending of the links section ensures that the links are only displayed when applicable, which optimizes the output format and avoids unnecessary blank lines.
  • The changes maintain the original intent of the method.

@johanneskoester johanneskoester merged commit 90e51ae into snakemake:main Sep 5, 2024
@github-actions github-actions bot mentioned this pull request Sep 5, 2024
Merged
johanneskoester pushed a commit that referenced this pull request Sep 7, 2024
@github-actions
chore(main): release 8.20.0 (#3070)
378384e 
🤖 I have created a release *beep* *boop*
---


##
[8.20.0](v8.19.3...v8.20.0)
(2024-09-07)


### Features

* allow skipping apptainer and conda tests if not available
([#3074](#3074))
([c3cd4e0](c3cd4e0))
* MANIFEST.in: include tests/ in sdist
([#3073](#3073))
([e24f3fc](e24f3fc))


### Bug Fixes

* add subfolders of report template to package data
([14a8f22](14a8f22))
* Inconsistent Linting Output Formatting
([#3064](#3064))
([90e51ae](90e51ae))
* retry when downloading assets
([58e41b0](58e41b0))
* skip asset download if files are already present
([#3076](#3076))
([0d3d1e1](0d3d1e1))

---
This PR was generated with [Release
Please](https://github.com/googleapis/release-please). See
[documentation](https://github.com/googleapis/release-please#release-please).

Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
@coderabbitai coderabbitai bot mentioned this pull request Sep 9, 2024
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@johanneskoester johanneskoester johanneskoester approved these changes

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@Kleinjohann @johanneskoester