fix: remove unregistered PyPI packages from notebooks and requirements (dependency confusion) by x4v13r64 · Pull Request #325 · microsoft/agent-governance-toolkit

x4v13r64 · 2026-03-21T08:49:57Z

Summary

This PR removes Python package names that do not exist on PyPI from notebooks and requirements.txt files, preventing dependency confusion attacks.

Notebooks — agent-os replaced with local install:

All six tutorial notebooks contained !pip install agent-os which queries PyPI for agent-os. This package is not published to PyPI — it is the internal package defined in packages/agent-os/ within this repository. An attacker who registers agent-os on PyPI would have arbitrary code silently executed in any notebook session that runs these cells.

Each install cell has been replaced with !pip install -e ../.. to install the local package directly.

Notebook	Before	After
01-hello-agent-os.ipynb	`!pip install agent-os --quiet`	`!pip install -e ../.. --quiet`
02-episodic-memory-demo.ipynb	`!pip install agent-os emk --quiet`	`!pip install -e ../.. emk --quiet`
03-time-travel-debugging.ipynb	`!pip install agent-os --quiet`	`!pip install -e ../.. --quiet`
04-cross-model-verification.ipynb	`!pip install agent-os[cmvk] --quiet`	`!pip install -e ..[cmvk] --quiet`
05-multi-agent-coordination.ipynb	`!pip install agent-os[iatp] --quiet`	`!pip install -e ..[iatp] --quiet`
06-policy-engine.ipynb	`!pip install agent-os --quiet`	`!pip install -e ../.. --quiet`

customer-service/requirements.txt — fake CRM SDK names replaced:

zendesk-sdk is not on PyPI → replaced with zenpy (the real Zendesk Python client)
freshdesk-sdk is not on PyPI → replaced with freshdesk (the real Freshdesk Python client)

healthcare-hipaa/requirements.txt — stdlib masquerading as a package:

hashlib-compat is not on PyPI → removed. hashlib is part of Python's standard library and requires no installation.

Test plan

Run each notebook cell-by-cell and confirm agent-os is installed from the local repository, not from PyPI
Confirm pip install -r packages/agent-os/examples/customer-service/requirements.txt succeeds with zenpy and freshdesk
Confirm pip install -r packages/agent-os/examples/healthcare-hipaa/requirements.txt succeeds without attempting to fetch hashlib-compat

…s (dependency confusion) - Replace !pip install agent-os with !pip install -e ../.. in all 6 notebooks; agent-os is not on PyPI and installing it from PyPI is a dependency confusion vector - Replace zendesk-sdk/freshdesk-sdk with zenpy/freshdesk (the real published SDKs) in customer-service/requirements.txt - Remove hashlib-compat from healthcare-hipaa/requirements.txt; hashlib is stdlib and hashlib-compat is not a real PyPI package

github-actions · 2026-03-21T08:50:07Z

Welcome to the Agent Governance Toolkit! Thanks for your first pull request.
Please ensure tests pass, code follows style (ruff check), and you have signed the CLA.
See our Contributing Guide.

github-actions · 2026-03-21T08:50:17Z

🤖 AI Agent: contributor-guide

Welcome! 🎉

Hi there, and welcome to the microsoft/agent-governance-toolkit community! Thank you for taking the time to contribute — we’re thrilled to have you here. Your effort to improve the project is greatly appreciated, and we’re excited to review your pull request. 😊

What You Did Well 🌟

Thorough Problem Identification: You clearly identified a critical security issue (dependency confusion) and provided a detailed explanation of the problem. This is a great example of responsible and thoughtful contribution.
Comprehensive Changes: Your PR addresses the issue across multiple files, including notebooks and requirements.txt files, ensuring consistency throughout the project.
Clear Documentation: The PR description is well-structured, with a summary, detailed explanation, and a test plan. The use of tables to show "Before" and "After" changes in the notebooks is especially helpful for reviewers.
Security Awareness: Highlighting the risks of unregistered PyPI packages and providing safer alternatives demonstrates a strong focus on security, which is critical for this project.

Suggestions for Improvement ✨

While your PR is excellent overall, here are a few suggestions to align it more closely with the project's conventions and best practices:

Linting with Ruff:
- The project uses Ruff for linting, specifically with rules for E, F, and W codes. Please ensure your changes pass linting checks. You can run Ruff locally with:
```
ruff check .
```
Testing:
- The test plan you provided is great! However, we recommend adding automated tests for the changes to ensure they are verified in CI. For example:
  - Add tests for the updated requirements.txt files to confirm that the correct packages are installed.
  - Add tests for the updated notebook installation commands to verify that the local package is installed correctly.
- Tests should be placed in the packages/{name}/tests/ directory. For example, tests for agent-os should go in packages/agent-os/tests/.
Commit Message Format:
- The project follows the Conventional Commits specification. Your commit message fix: remove unregistered PyPI packages from notebooks and requirements (dependency confusion) is close, but it could be refined slightly. Consider:
```
fix(dependencies): remove unregistered PyPI packages to prevent dependency confusion
```
Notebook Updates:
- While your changes to the notebooks are excellent, it would be helpful to confirm that the updated notebooks run without errors. If you haven’t already, please run each notebook end-to-end to ensure the changes work as expected.

Resources 📚

Here are some resources to help you with the above suggestions:

CONTRIBUTING.md: Guidelines for contributing to this project.
QUICKSTART.md: Instructions for setting up the project locally.
Ruff Documentation: For linting rules and configuration.

Next Steps 🚀

Here’s what happens next:

Address Feedback: Please review the suggestions above and make any necessary updates to your PR.
Run Tests and Linting: Ensure your changes pass all tests and adhere to the linting rules.
Update the PR: Push your changes to the same branch, and they’ll automatically update this PR.
Further Review: Once you’ve made updates, let us know by commenting here. We’ll review your changes again and provide further feedback if needed.

If you have any questions or need help with anything, don’t hesitate to ask! We’re here to support you. 😊

Thank you again for your contribution — we’re looking forward to collaborating with you! 🎉

github-actions · 2026-03-21T08:50:20Z

🤖 AI Agent: security-scanner

Security Review of PR: "fix: remove unregistered PyPI packages from notebooks and requirements (dependency confusion)"

Summary of Changes

This PR addresses potential dependency confusion vulnerabilities by:

Replacing references to non-existent PyPI packages in Jupyter notebooks with local package installations.
Updating requirements.txt files to replace non-existent or incorrect package names with valid ones.
Removing unnecessary or invalid dependencies from requirements.txt.

Security Findings

1. Dependency Confusion Mitigation

Risk: Dependency confusion occurs when an attacker registers a malicious package on a public package repository (e.g., PyPI) with the same name as an internal package. If the repository is queried for the package, the malicious version could be installed instead of the intended internal package.
Finding: The PR effectively mitigates this risk by replacing !pip install agent-os in notebooks with !pip install -e ../.., ensuring that the local version of the agent-os package is installed instead of querying PyPI. Additionally, the PR replaces non-existent PyPI package names in requirements.txt with valid alternatives or removes them entirely.
Rating: 🔵 LOW (The issue is addressed in this PR).

Recommendation: Ensure that all developers are aware of the risks of dependency confusion and follow best practices, such as using private package repositories or specifying exact package sources in requirements.txt.

2. Potential for Supply Chain Attacks

Risk: The use of external dependencies (zenpy, freshdesk, etc.) introduces a potential supply chain attack vector. If these dependencies are compromised, malicious code could be introduced into the project.
Finding: While the PR replaces non-existent packages with valid ones, it does not address the broader risk of supply chain attacks.
Rating: 🟡 MEDIUM

Recommendation:

Pin dependencies to specific versions in requirements.txt to prevent unintentional updates to malicious versions.
Use tools like pip-audit or safety to regularly scan dependencies for known vulnerabilities.
Consider implementing dependency signing or using a private PyPI mirror to ensure the integrity of dependencies.

3. Potential for Debugging Information Leakage

Risk: Debugging output in notebooks (e.g., print statements) could inadvertently expose sensitive information, such as credentials or internal details, if the notebooks are shared or executed in an untrusted environment.
Finding: While the PR does not introduce new sensitive information in the debugging output, it does not explicitly address the risk of sensitive data leakage in the existing debug output.
Rating: 🔵 LOW

Recommendation:

Review all debug output to ensure no sensitive information (e.g., API keys, internal paths, or sensitive data) is exposed.
Consider implementing a logging mechanism that redacts sensitive information before outputting it.

Positive Observations

The PR addresses a critical security vulnerability (dependency confusion) effectively.
The changes are well-documented, with clear explanations of the modifications made.
The test plan includes steps to verify that the changes work as intended.

Final Assessment

Overall Rating: 🔵 LOW
Approval Status: ✅ Approved with Recommendations

This PR addresses a critical dependency confusion vulnerability effectively. However, the broader risks of supply chain attacks and potential debugging information leakage should be addressed in future updates. It is recommended to implement dependency version pinning and conduct regular dependency vulnerability scans. Additionally, ensure that debug output does not expose sensitive information.

github-actions

🤖 AI Agent: code-reviewer

Pull Request Review: Dependency Confusion Mitigation

This PR addresses a critical security issue by removing references to unregistered PyPI packages from notebooks and requirements.txt files, mitigating the risk of dependency confusion attacks. Below is a detailed review of the changes.

🔴 CRITICAL: Security Issues

Dependency Confusion Attack Mitigation
- The PR correctly replaces !pip install agent-os with !pip install -e ../.. in all notebooks, ensuring the local package is installed instead of querying PyPI. This eliminates the risk of an attacker registering a malicious agent-os package on PyPI.
- The replacement of non-existent PyPI packages (zendesk-sdk, freshdesk-sdk, hashlib-compat) with valid alternatives or removal is appropriate and mitigates the risk of dependency confusion.
Action Taken:
- ✅ The changes effectively address the security vulnerability. No further action is required.

💡 SUGGESTION: Notebook Usability Improvements

Notebook Dependency Installation
- The updated !pip install -e ../.. command assumes the user runs the notebooks from the notebooks/ directory. If the user runs the notebook from a different directory, this command will fail.
Suggestion:
- Add a comment or cell at the start of each notebook to ensure the user is in the correct directory before running the notebook. For example:
```
import os
if not os.path.exists("../setup.py"):
    raise RuntimeError("Please run this notebook from the 'notebooks/' directory.")
```
Unicode Characters in Notebooks
- The PR replaces emoji characters with their Unicode equivalents (e.g., ✅ → \u2705). While this ensures compatibility across environments, it reduces readability when viewing the raw notebook files.
Suggestion:
- Consider adding a comment explaining the use of Unicode characters for compatibility, or provide a script to convert Unicode back to emoji for environments that support them.

🟡 WARNING: Potential Breaking Changes

Changes to requirements.txt
- Replacing zendesk-sdk with zenpy and freshdesk-sdk with freshdesk may cause issues if users have existing code that depends on the original (non-existent) package names. While this is a necessary change for security, it could break user workflows.
Recommendation:
- Clearly document this change in the release notes and provide migration guidance for users who may need to adapt their code to the new package names.
Notebook Dependency Changes
- Users who rely on the old !pip install agent-os command in their own scripts or workflows will need to update their code to use the new !pip install -e ../.. command.
Recommendation:
- Include a note in the release documentation highlighting this change and explaining how users can update their workflows.

💡 SUGGESTION: Testing Enhancements

Automated Notebook Testing
- The test plan suggests manually running each notebook cell-by-cell to verify the changes. This process is error-prone and time-consuming.
Suggestion:
- Integrate automated notebook testing into the CI/CD pipeline using a tool like nbval or pytest-notebook. This will ensure that future changes to the notebooks do not introduce regressions.
Dependency Installation Tests
- The test plan includes manual verification of pip install -r commands for the updated requirements.txt files.
Suggestion:
- Add automated tests to the CI/CD pipeline to verify that all requirements.txt files can be installed without errors. This can be done using a simple script that iterates through all requirements.txt files and runs pip install -r.

💡 SUGGESTION: Documentation Updates

Update README and Documentation
- The changes to the installation commands in the notebooks and requirements.txt files should be reflected in the project's README and any relevant documentation.
Suggestion:
- Update the README to include instructions for installing the local agent-os package using pip install -e ../...
- If the project has a "Getting Started" guide or similar documentation, ensure it reflects the updated installation instructions.
Explain Removed Dependencies
- The removal of hashlib-compat and replacement of zendesk-sdk and freshdesk-sdk should be documented in the release notes or a migration guide.

✅ Summary of Changes

Security Fixes: The PR effectively mitigates dependency confusion risks by removing references to unregistered PyPI packages.
Breaking Changes: Changes to requirements.txt and notebook installation commands may break existing user workflows.
Suggestions: Add automated testing for notebooks and dependency installation, update documentation, and provide migration guidance for users.

Final Recommendation

Approve with Suggestions: The PR addresses a critical security issue and should be merged. However, the team should consider implementing the suggested improvements to enhance usability, testing, and documentation.

x4v13r64 · 2026-03-21T08:54:26Z

@microsoft-github-policy-service agree

imran-siddique · 2026-03-21T16:11:31Z

Good security fix — the notebook changes are correct. However, code review found 10+ additional \pip install agent-os\ instances in docs, examples, and TypeScript codegen that aren't covered by this PR. I'll merge this as-is (the notebooks are the highest-risk surface) and push a fast-follow to catch the remaining instances.

…s (dependency confusion) (microsoft#325) - Replace !pip install agent-os with !pip install -e ../.. in all 6 notebooks; agent-os is not on PyPI and installing it from PyPI is a dependency confusion vector - Replace zendesk-sdk/freshdesk-sdk with zenpy/freshdesk (the real published SDKs) in customer-service/requirements.txt - Remove hashlib-compat from healthcare-hipaa/requirements.txt; hashlib is stdlib and hashlib-compat is not a real PyPI package

…stall agent-os with agent-os-kernel Replace all remaining instances of `pip install agent-os` (unregistered on PyPI) with `pip install agent-os-kernel` (the actual package) across docs, examples, TypeScript extensions, CLI source, tests, and SVG assets. Also fixes `pip install emk` references to point to `agent-os-kernel[full]` since emk is a submodule, not a standalone PyPI package. Completes the fix started in PR microsoft#325 which only covered notebooks. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

#327) * docs: add testing guide for external testers and customers Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: add regulatory alignment table and Purview positioning to README Add EU AI Act, Colorado AI Act, and GPAI obligations timeline with AGT coverage mapping. Reference Microsoft Purview DSPM for AI as complementary data governance layer. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix(ci): restore read-all at workflow level for Scorecard verification The Scorecard API rejects workflows with write permissions at the workflow level. id-token: write and security-events: write must be scoped to the job level only. Restores permissions: read-all at workflow level while keeping job-level write permissions intact. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: add comprehensive docstrings to mcp_adapter.py classes (#324) Add Google-style docstrings with Args, Returns, Raises, Attributes, and Example sections to MCPMessageType, MCPAdapter, and MCPServer classes. Also enhances docstrings for key methods including handle_message, _handle_tools_call, _handle_resources_read, and _map_tool_to_action. Fixes #316 * ci: add markdown link checker workflow (#323) Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com> * feat: add policy evaluation heatmap to SRE dashboard (#309) (#326) * fix: remove unregistered PyPI packages from notebooks and requirements (dependency confusion) (#325) - Replace !pip install agent-os with !pip install -e ../.. in all 6 notebooks; agent-os is not on PyPI and installing it from PyPI is a dependency confusion vector - Replace zendesk-sdk/freshdesk-sdk with zenpy/freshdesk (the real published SDKs) in customer-service/requirements.txt - Remove hashlib-compat from healthcare-hipaa/requirements.txt; hashlib is stdlib and hashlib-compat is not a real PyPI package * fix(security): complete dependency confusion fix — replace all pip install agent-os with agent-os-kernel Replace all remaining instances of `pip install agent-os` (unregistered on PyPI) with `pip install agent-os-kernel` (the actual package) across docs, examples, TypeScript extensions, CLI source, tests, and SVG assets. Also fixes `pip install emk` references to point to `agent-os-kernel[full]` since emk is a submodule, not a standalone PyPI package. Completes the fix started in PR #325 which only covered notebooks. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> --------- Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> Co-authored-by: Parsa Faraji Alamouti <165321600+parsa-faraji@users.noreply.github.com> Co-authored-by: Matt Van Horn <mvanhorn@users.noreply.github.com> Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com> Co-authored-by: Zeel Desai <72783325+zeel2104@users.noreply.github.com> Co-authored-by: Xavier Garceau-Aranda <xavier.garceau-aranda@posteo.net>

…ent-os replaced (#328) * docs: add testing guide for external testers and customers Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: add regulatory alignment table and Purview positioning to README Add EU AI Act, Colorado AI Act, and GPAI obligations timeline with AGT coverage mapping. Reference Microsoft Purview DSPM for AI as complementary data governance layer. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix(ci): restore read-all at workflow level for Scorecard verification The Scorecard API rejects workflows with write permissions at the workflow level. id-token: write and security-events: write must be scoped to the job level only. Restores permissions: read-all at workflow level while keeping job-level write permissions intact. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: add comprehensive docstrings to mcp_adapter.py classes (#324) Add Google-style docstrings with Args, Returns, Raises, Attributes, and Example sections to MCPMessageType, MCPAdapter, and MCPServer classes. Also enhances docstrings for key methods including handle_message, _handle_tools_call, _handle_resources_read, and _map_tool_to_action. Fixes #316 * ci: add markdown link checker workflow (#323) Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com> * feat: add policy evaluation heatmap to SRE dashboard (#309) (#326) * fix: remove unregistered PyPI packages from notebooks and requirements (dependency confusion) (#325) - Replace !pip install agent-os with !pip install -e ../.. in all 6 notebooks; agent-os is not on PyPI and installing it from PyPI is a dependency confusion vector - Replace zendesk-sdk/freshdesk-sdk with zenpy/freshdesk (the real published SDKs) in customer-service/requirements.txt - Remove hashlib-compat from healthcare-hipaa/requirements.txt; hashlib is stdlib and hashlib-compat is not a real PyPI package * fix(security): complete dependency confusion fix — replace all pip install agent-os with agent-os-kernel Replace all remaining instances of `pip install agent-os` (unregistered on PyPI) with `pip install agent-os-kernel` (the actual package) across docs, examples, TypeScript extensions, CLI source, tests, and SVG assets. Also fixes `pip install emk` references to point to `agent-os-kernel[full]` since emk is a submodule, not a standalone PyPI package. Completes the fix started in PR #325 which only covered notebooks. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> --------- Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> Co-authored-by: Parsa Faraji Alamouti <165321600+parsa-faraji@users.noreply.github.com> Co-authored-by: Matt Van Horn <mvanhorn@users.noreply.github.com> Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com> Co-authored-by: Zeel Desai <72783325+zeel2104@users.noreply.github.com> Co-authored-by: Xavier Garceau-Aranda <xavier.garceau-aranda@posteo.net>

* docs: add testing guide for external testers and customers Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: add regulatory alignment table and Purview positioning to README Add EU AI Act, Colorado AI Act, and GPAI obligations timeline with AGT coverage mapping. Reference Microsoft Purview DSPM for AI as complementary data governance layer. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix(ci): restore read-all at workflow level for Scorecard verification The Scorecard API rejects workflows with write permissions at the workflow level. id-token: write and security-events: write must be scoped to the job level only. Restores permissions: read-all at workflow level while keeping job-level write permissions intact. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: add comprehensive docstrings to mcp_adapter.py classes (#324) Add Google-style docstrings with Args, Returns, Raises, Attributes, and Example sections to MCPMessageType, MCPAdapter, and MCPServer classes. Also enhances docstrings for key methods including handle_message, _handle_tools_call, _handle_resources_read, and _map_tool_to_action. Fixes #316 * ci: add markdown link checker workflow (#323) Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com> * feat: add policy evaluation heatmap to SRE dashboard (#309) (#326) * fix: remove unregistered PyPI packages from notebooks and requirements (dependency confusion) (#325) - Replace !pip install agent-os with !pip install -e ../.. in all 6 notebooks; agent-os is not on PyPI and installing it from PyPI is a dependency confusion vector - Replace zendesk-sdk/freshdesk-sdk with zenpy/freshdesk (the real published SDKs) in customer-service/requirements.txt - Remove hashlib-compat from healthcare-hipaa/requirements.txt; hashlib is stdlib and hashlib-compat is not a real PyPI package * fix(security): complete dependency confusion fix — replace all pip install agent-os with agent-os-kernel Replace all remaining instances of `pip install agent-os` (unregistered on PyPI) with `pip install agent-os-kernel` (the actual package) across docs, examples, TypeScript extensions, CLI source, tests, and SVG assets. Also fixes `pip install emk` references to point to `agent-os-kernel[full]` since emk is a submodule, not a standalone PyPI package. Completes the fix started in PR #325 which only covered notebooks. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: update framework star counts to current values Dify 65K→133K, AutoGen 42K→55K, CrewAI 28K→46K, Semantic Kernel 24K→27K, LangGraph 24K→27K, Haystack 22K→24K, Agent Framework 7.6K→8K. Added star counts for OpenAI Agents SDK (20K) and Google ADK (18K). Sorted by stars descending. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> --------- Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> Co-authored-by: Parsa Faraji Alamouti <165321600+parsa-faraji@users.noreply.github.com> Co-authored-by: Matt Van Horn <mvanhorn@users.noreply.github.com> Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com> Co-authored-by: Zeel Desai <72783325+zeel2104@users.noreply.github.com> Co-authored-by: Xavier Garceau-Aranda <xavier.garceau-aranda@posteo.net>

…summary (#345) * docs: add testing guide for external testers and customers Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: add regulatory alignment table and Purview positioning to README Add EU AI Act, Colorado AI Act, and GPAI obligations timeline with AGT coverage mapping. Reference Microsoft Purview DSPM for AI as complementary data governance layer. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix(ci): restore read-all at workflow level for Scorecard verification The Scorecard API rejects workflows with write permissions at the workflow level. id-token: write and security-events: write must be scoped to the job level only. Restores permissions: read-all at workflow level while keeping job-level write permissions intact. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: add comprehensive docstrings to mcp_adapter.py classes (#324) Add Google-style docstrings with Args, Returns, Raises, Attributes, and Example sections to MCPMessageType, MCPAdapter, and MCPServer classes. Also enhances docstrings for key methods including handle_message, _handle_tools_call, _handle_resources_read, and _map_tool_to_action. Fixes #316 * ci: add markdown link checker workflow (#323) Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com> * feat: add policy evaluation heatmap to SRE dashboard (#309) (#326) * fix: remove unregistered PyPI packages from notebooks and requirements (dependency confusion) (#325) - Replace !pip install agent-os with !pip install -e ../.. in all 6 notebooks; agent-os is not on PyPI and installing it from PyPI is a dependency confusion vector - Replace zendesk-sdk/freshdesk-sdk with zenpy/freshdesk (the real published SDKs) in customer-service/requirements.txt - Remove hashlib-compat from healthcare-hipaa/requirements.txt; hashlib is stdlib and hashlib-compat is not a real PyPI package * fix(security): complete dependency confusion fix — replace all pip install agent-os with agent-os-kernel Replace all remaining instances of `pip install agent-os` (unregistered on PyPI) with `pip install agent-os-kernel` (the actual package) across docs, examples, TypeScript extensions, CLI source, tests, and SVG assets. Also fixes `pip install emk` references to point to `agent-os-kernel[full]` since emk is a submodule, not a standalone PyPI package. Completes the fix started in PR #325 which only covered notebooks. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: update framework star counts to current values Dify 65K→133K, AutoGen 42K→55K, CrewAI 28K→46K, Semantic Kernel 24K→27K, LangGraph 24K→27K, Haystack 22K→24K, Agent Framework 7.6K→8K. Added star counts for OpenAI Agents SDK (20K) and Google ADK (18K). Sorted by stars descending. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * feat(ci): add PR review orchestrator — collapse agents, post unified summary - Wrap individual agent comments in <details> tags (collapsed by default) - Make agent comments idempotent (update on re-push, don't duplicate) - Add ai-pr-summary.yml workflow that posts one clean verdict table - Summary uses HTML marker for upsert behavior Contributors now see ONE summary table instead of 5-7 separate bot comments. Individual agent reports are preserved but collapsed for reference. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> --------- Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> Co-authored-by: Parsa Faraji Alamouti <165321600+parsa-faraji@users.noreply.github.com> Co-authored-by: Matt Van Horn <mvanhorn@users.noreply.github.com> Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com> Co-authored-by: Zeel Desai <72783325+zeel2104@users.noreply.github.com> Co-authored-by: Xavier Garceau-Aranda <xavier.garceau-aranda@posteo.net>

…LICENSE (#344) * docs: add testing guide for external testers and customers Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: add regulatory alignment table and Purview positioning to README Add EU AI Act, Colorado AI Act, and GPAI obligations timeline with AGT coverage mapping. Reference Microsoft Purview DSPM for AI as complementary data governance layer. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix(ci): restore read-all at workflow level for Scorecard verification The Scorecard API rejects workflows with write permissions at the workflow level. id-token: write and security-events: write must be scoped to the job level only. Restores permissions: read-all at workflow level while keeping job-level write permissions intact. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: add comprehensive docstrings to mcp_adapter.py classes (#324) Add Google-style docstrings with Args, Returns, Raises, Attributes, and Example sections to MCPMessageType, MCPAdapter, and MCPServer classes. Also enhances docstrings for key methods including handle_message, _handle_tools_call, _handle_resources_read, and _map_tool_to_action. Fixes #316 * ci: add markdown link checker workflow (#323) Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com> * feat: add policy evaluation heatmap to SRE dashboard (#309) (#326) * fix: remove unregistered PyPI packages from notebooks and requirements (dependency confusion) (#325) - Replace !pip install agent-os with !pip install -e ../.. in all 6 notebooks; agent-os is not on PyPI and installing it from PyPI is a dependency confusion vector - Replace zendesk-sdk/freshdesk-sdk with zenpy/freshdesk (the real published SDKs) in customer-service/requirements.txt - Remove hashlib-compat from healthcare-hipaa/requirements.txt; hashlib is stdlib and hashlib-compat is not a real PyPI package * fix(security): complete dependency confusion fix — replace all pip install agent-os with agent-os-kernel Replace all remaining instances of `pip install agent-os` (unregistered on PyPI) with `pip install agent-os-kernel` (the actual package) across docs, examples, TypeScript extensions, CLI source, tests, and SVG assets. Also fixes `pip install emk` references to point to `agent-os-kernel[full]` since emk is a submodule, not a standalone PyPI package. Completes the fix started in PR #325 which only covered notebooks. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: update framework star counts to current values Dify 65K→133K, AutoGen 42K→55K, CrewAI 28K→46K, Semantic Kernel 24K→27K, LangGraph 24K→27K, Haystack 22K→24K, Agent Framework 7.6K→8K. Added star counts for OpenAI Agents SDK (20K) and Google ADK (18K). Sorted by stars descending. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix: fill community PR gaps — bare excepts, print→logging, py.typed, LICENSE files Address remaining items from issues #330, #331, #332, #334 that community PRs partially covered. - Fix bare except blocks in time_travel_debugger.py, demo_client.py - Replace print() with logging in integrity.py, promotion.py, verify.py - Add py.typed markers for PEP 561 compliance - Copy LICENSE to all subpackages Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> --------- Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> Co-authored-by: Parsa Faraji Alamouti <165321600+parsa-faraji@users.noreply.github.com> Co-authored-by: Matt Van Horn <mvanhorn@users.noreply.github.com> Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com> Co-authored-by: Zeel Desai <72783325+zeel2104@users.noreply.github.com> Co-authored-by: Xavier Garceau-Aranda <xavier.garceau-aranda@posteo.net>

…ion (#346) * docs: add testing guide for external testers and customers Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: add regulatory alignment table and Purview positioning to README Add EU AI Act, Colorado AI Act, and GPAI obligations timeline with AGT coverage mapping. Reference Microsoft Purview DSPM for AI as complementary data governance layer. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix(ci): restore read-all at workflow level for Scorecard verification The Scorecard API rejects workflows with write permissions at the workflow level. id-token: write and security-events: write must be scoped to the job level only. Restores permissions: read-all at workflow level while keeping job-level write permissions intact. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: add comprehensive docstrings to mcp_adapter.py classes (#324) Add Google-style docstrings with Args, Returns, Raises, Attributes, and Example sections to MCPMessageType, MCPAdapter, and MCPServer classes. Also enhances docstrings for key methods including handle_message, _handle_tools_call, _handle_resources_read, and _map_tool_to_action. Fixes #316 * ci: add markdown link checker workflow (#323) Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com> * feat: add policy evaluation heatmap to SRE dashboard (#309) (#326) * fix: remove unregistered PyPI packages from notebooks and requirements (dependency confusion) (#325) - Replace !pip install agent-os with !pip install -e ../.. in all 6 notebooks; agent-os is not on PyPI and installing it from PyPI is a dependency confusion vector - Replace zendesk-sdk/freshdesk-sdk with zenpy/freshdesk (the real published SDKs) in customer-service/requirements.txt - Remove hashlib-compat from healthcare-hipaa/requirements.txt; hashlib is stdlib and hashlib-compat is not a real PyPI package * fix(security): complete dependency confusion fix — replace all pip install agent-os with agent-os-kernel Replace all remaining instances of `pip install agent-os` (unregistered on PyPI) with `pip install agent-os-kernel` (the actual package) across docs, examples, TypeScript extensions, CLI source, tests, and SVG assets. Also fixes `pip install emk` references to point to `agent-os-kernel[full]` since emk is a submodule, not a standalone PyPI package. Completes the fix started in PR #325 which only covered notebooks. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: update framework star counts to current values Dify 65K→133K, AutoGen 42K→55K, CrewAI 28K→46K, Semantic Kernel 24K→27K, LangGraph 24K→27K, Haystack 22K→24K, Agent Framework 7.6K→8K. Added star counts for OpenAI Agents SDK (20K) and Google ADK (18K). Sorted by stars descending. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * feat(compliance): add compliance_grade() method to GovernanceAttestation Adds a letter-grade (A-F) method based on OWASP ASI control coverage percentage. Updates README with usage example. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix: broken markdown links and lychee exclusions - Fix stargazers badge URL in agentmesh-integrations/README.md - Fix internal links to agent-os and agent-sre integrations - Add lychee exclusions for nuget (unpublished), nist.gov (flaky), stargazers paths, and not-yet-created compliance docs Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * ci: make link checker non-blocking until pre-existing links are fixed (#320) There are 20+ pre-existing broken links across docs/, proposals/, and tutorials/ that predate this PR. Setting fail: false so the check reports but doesn't block merges. Issue #320 tracks the full link cleanup. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> --------- Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> Co-authored-by: Parsa Faraji Alamouti <165321600+parsa-faraji@users.noreply.github.com> Co-authored-by: Matt Van Horn <mvanhorn@users.noreply.github.com> Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com> Co-authored-by: Zeel Desai <72783325+zeel2104@users.noreply.github.com> Co-authored-by: Xavier Garceau-Aranda <xavier.garceau-aranda@posteo.net>

…349) * docs: add testing guide for external testers and customers Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: add regulatory alignment table and Purview positioning to README Add EU AI Act, Colorado AI Act, and GPAI obligations timeline with AGT coverage mapping. Reference Microsoft Purview DSPM for AI as complementary data governance layer. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix(ci): restore read-all at workflow level for Scorecard verification The Scorecard API rejects workflows with write permissions at the workflow level. id-token: write and security-events: write must be scoped to the job level only. Restores permissions: read-all at workflow level while keeping job-level write permissions intact. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: add comprehensive docstrings to mcp_adapter.py classes (#324) Add Google-style docstrings with Args, Returns, Raises, Attributes, and Example sections to MCPMessageType, MCPAdapter, and MCPServer classes. Also enhances docstrings for key methods including handle_message, _handle_tools_call, _handle_resources_read, and _map_tool_to_action. Fixes #316 * ci: add markdown link checker workflow (#323) Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com> * feat: add policy evaluation heatmap to SRE dashboard (#309) (#326) * fix: remove unregistered PyPI packages from notebooks and requirements (dependency confusion) (#325) - Replace !pip install agent-os with !pip install -e ../.. in all 6 notebooks; agent-os is not on PyPI and installing it from PyPI is a dependency confusion vector - Replace zendesk-sdk/freshdesk-sdk with zenpy/freshdesk (the real published SDKs) in customer-service/requirements.txt - Remove hashlib-compat from healthcare-hipaa/requirements.txt; hashlib is stdlib and hashlib-compat is not a real PyPI package * fix(security): complete dependency confusion fix — replace all pip install agent-os with agent-os-kernel Replace all remaining instances of `pip install agent-os` (unregistered on PyPI) with `pip install agent-os-kernel` (the actual package) across docs, examples, TypeScript extensions, CLI source, tests, and SVG assets. Also fixes `pip install emk` references to point to `agent-os-kernel[full]` since emk is a submodule, not a standalone PyPI package. Completes the fix started in PR #325 which only covered notebooks. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: update framework star counts to current values Dify 65K→133K, AutoGen 42K→55K, CrewAI 28K→46K, Semantic Kernel 24K→27K, LangGraph 24K→27K, Haystack 22K→24K, Agent Framework 7.6K→8K. Added star counts for OpenAI Agents SDK (20K) and Google ADK (18K). Sorted by stars descending. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> --------- Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> Co-authored-by: Parsa Faraji Alamouti <165321600+parsa-faraji@users.noreply.github.com> Co-authored-by: Matt Van Horn <mvanhorn@users.noreply.github.com> Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com> Co-authored-by: Zeel Desai <72783325+zeel2104@users.noreply.github.com> Co-authored-by: Xavier Garceau-Aranda <xavier.garceau-aranda@posteo.net>

…it CI (#350) * docs: add testing guide for external testers and customers Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: add regulatory alignment table and Purview positioning to README Add EU AI Act, Colorado AI Act, and GPAI obligations timeline with AGT coverage mapping. Reference Microsoft Purview DSPM for AI as complementary data governance layer. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix(ci): restore read-all at workflow level for Scorecard verification The Scorecard API rejects workflows with write permissions at the workflow level. id-token: write and security-events: write must be scoped to the job level only. Restores permissions: read-all at workflow level while keeping job-level write permissions intact. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: add comprehensive docstrings to mcp_adapter.py classes (#324) Add Google-style docstrings with Args, Returns, Raises, Attributes, and Example sections to MCPMessageType, MCPAdapter, and MCPServer classes. Also enhances docstrings for key methods including handle_message, _handle_tools_call, _handle_resources_read, and _map_tool_to_action. Fixes #316 * ci: add markdown link checker workflow (#323) Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com> * feat: add policy evaluation heatmap to SRE dashboard (#309) (#326) * fix: remove unregistered PyPI packages from notebooks and requirements (dependency confusion) (#325) - Replace !pip install agent-os with !pip install -e ../.. in all 6 notebooks; agent-os is not on PyPI and installing it from PyPI is a dependency confusion vector - Replace zendesk-sdk/freshdesk-sdk with zenpy/freshdesk (the real published SDKs) in customer-service/requirements.txt - Remove hashlib-compat from healthcare-hipaa/requirements.txt; hashlib is stdlib and hashlib-compat is not a real PyPI package * fix(security): complete dependency confusion fix — replace all pip install agent-os with agent-os-kernel Replace all remaining instances of `pip install agent-os` (unregistered on PyPI) with `pip install agent-os-kernel` (the actual package) across docs, examples, TypeScript extensions, CLI source, tests, and SVG assets. Also fixes `pip install emk` references to point to `agent-os-kernel[full]` since emk is a submodule, not a standalone PyPI package. Completes the fix started in PR #325 which only covered notebooks. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: update framework star counts to current values Dify 65K→133K, AutoGen 42K→55K, CrewAI 28K→46K, Semantic Kernel 24K→27K, LangGraph 24K→27K, Haystack 22K→24K, Agent Framework 7.6K→8K. Added star counts for OpenAI Agents SDK (20K) and Google ADK (18K). Sorted by stars descending. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * feat(security): add dependency confusion pre-commit hook + weekly audit CI - scripts/check_dependency_confusion.py: Pre-commit hook that scans for pip install commands referencing unregistered PyPI packages. Maintains an allowlist of known registered packages. - .github/workflows/weekly-security-audit.yml: Weekly CI job running dependency confusion scan, security skills scan, and weak crypto check. Uploads reports as artifacts with 90-day retention. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> --------- Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> Co-authored-by: Parsa Faraji Alamouti <165321600+parsa-faraji@users.noreply.github.com> Co-authored-by: Matt Van Horn <mvanhorn@users.noreply.github.com> Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com> Co-authored-by: Zeel Desai <72783325+zeel2104@users.noreply.github.com> Co-authored-by: Xavier Garceau-Aranda <xavier.garceau-aranda@posteo.net>

…icrosoft#349) * docs: add testing guide for external testers and customers Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: add regulatory alignment table and Purview positioning to README Add EU AI Act, Colorado AI Act, and GPAI obligations timeline with AGT coverage mapping. Reference Microsoft Purview DSPM for AI as complementary data governance layer. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix(ci): restore read-all at workflow level for Scorecard verification The Scorecard API rejects workflows with write permissions at the workflow level. id-token: write and security-events: write must be scoped to the job level only. Restores permissions: read-all at workflow level while keeping job-level write permissions intact. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: add comprehensive docstrings to mcp_adapter.py classes (microsoft#324) Add Google-style docstrings with Args, Returns, Raises, Attributes, and Example sections to MCPMessageType, MCPAdapter, and MCPServer classes. Also enhances docstrings for key methods including handle_message, _handle_tools_call, _handle_resources_read, and _map_tool_to_action. Fixes microsoft#316 * ci: add markdown link checker workflow (microsoft#323) Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com> * feat: add policy evaluation heatmap to SRE dashboard (microsoft#309) (microsoft#326) * fix: remove unregistered PyPI packages from notebooks and requirements (dependency confusion) (microsoft#325) - Replace !pip install agent-os with !pip install -e ../.. in all 6 notebooks; agent-os is not on PyPI and installing it from PyPI is a dependency confusion vector - Replace zendesk-sdk/freshdesk-sdk with zenpy/freshdesk (the real published SDKs) in customer-service/requirements.txt - Remove hashlib-compat from healthcare-hipaa/requirements.txt; hashlib is stdlib and hashlib-compat is not a real PyPI package * fix(security): complete dependency confusion fix — replace all pip install agent-os with agent-os-kernel Replace all remaining instances of `pip install agent-os` (unregistered on PyPI) with `pip install agent-os-kernel` (the actual package) across docs, examples, TypeScript extensions, CLI source, tests, and SVG assets. Also fixes `pip install emk` references to point to `agent-os-kernel[full]` since emk is a submodule, not a standalone PyPI package. Completes the fix started in PR microsoft#325 which only covered notebooks. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: update framework star counts to current values Dify 65K→133K, AutoGen 42K→55K, CrewAI 28K→46K, Semantic Kernel 24K→27K, LangGraph 24K→27K, Haystack 22K→24K, Agent Framework 7.6K→8K. Added star counts for OpenAI Agents SDK (20K) and Google ADK (18K). Sorted by stars descending. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> --------- Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> Co-authored-by: Parsa Faraji Alamouti <165321600+parsa-faraji@users.noreply.github.com> Co-authored-by: Matt Van Horn <mvanhorn@users.noreply.github.com> Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com> Co-authored-by: Zeel Desai <72783325+zeel2104@users.noreply.github.com> Co-authored-by: Xavier Garceau-Aranda <xavier.garceau-aranda@posteo.net>

* docs: add testing guide for external testers and customers Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: add regulatory alignment table and Purview positioning to README Add EU AI Act, Colorado AI Act, and GPAI obligations timeline with AGT coverage mapping. Reference Microsoft Purview DSPM for AI as complementary data governance layer. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix(ci): restore read-all at workflow level for Scorecard verification The Scorecard API rejects workflows with write permissions at the workflow level. id-token: write and security-events: write must be scoped to the job level only. Restores permissions: read-all at workflow level while keeping job-level write permissions intact. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: add comprehensive docstrings to mcp_adapter.py classes (#324) Add Google-style docstrings with Args, Returns, Raises, Attributes, and Example sections to MCPMessageType, MCPAdapter, and MCPServer classes. Also enhances docstrings for key methods including handle_message, _handle_tools_call, _handle_resources_read, and _map_tool_to_action. Fixes #316 * ci: add markdown link checker workflow (#323) Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com> * feat: add policy evaluation heatmap to SRE dashboard (#309) (#326) * fix: remove unregistered PyPI packages from notebooks and requirements (dependency confusion) (#325) - Replace !pip install agent-os with !pip install -e ../.. in all 6 notebooks; agent-os is not on PyPI and installing it from PyPI is a dependency confusion vector - Replace zendesk-sdk/freshdesk-sdk with zenpy/freshdesk (the real published SDKs) in customer-service/requirements.txt - Remove hashlib-compat from healthcare-hipaa/requirements.txt; hashlib is stdlib and hashlib-compat is not a real PyPI package * fix(security): complete dependency confusion fix — replace all pip install agent-os with agent-os-kernel Replace all remaining instances of `pip install agent-os` (unregistered on PyPI) with `pip install agent-os-kernel` (the actual package) across docs, examples, TypeScript extensions, CLI source, tests, and SVG assets. Also fixes `pip install emk` references to point to `agent-os-kernel[full]` since emk is a submodule, not a standalone PyPI package. Completes the fix started in PR #325 which only covered notebooks. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: update framework star counts to current values Dify 65K→133K, AutoGen 42K→55K, CrewAI 28K→46K, Semantic Kernel 24K→27K, LangGraph 24K→27K, Haystack 22K→24K, Agent Framework 7.6K→8K. Added star counts for OpenAI Agents SDK (20K) and Google ADK (18K). Sorted by stars descending. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * feat(security): add dependency confusion pre-commit hook + weekly audit CI - scripts/check_dependency_confusion.py: Pre-commit hook that scans for pip install commands referencing unregistered PyPI packages. Maintains an allowlist of known registered packages. - .github/workflows/weekly-security-audit.yml: Weekly CI job running dependency confusion scan, security skills scan, and weak crypto check. Uploads reports as artifacts with 90-day retention. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix(security): proactive audit — dependency confusion + MD5→SHA-256 (#349) * docs: add testing guide for external testers and customers Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: add regulatory alignment table and Purview positioning to README Add EU AI Act, Colorado AI Act, and GPAI obligations timeline with AGT coverage mapping. Reference Microsoft Purview DSPM for AI as complementary data governance layer. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix(ci): restore read-all at workflow level for Scorecard verification The Scorecard API rejects workflows with write permissions at the workflow level. id-token: write and security-events: write must be scoped to the job level only. Restores permissions: read-all at workflow level while keeping job-level write permissions intact. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: add comprehensive docstrings to mcp_adapter.py classes (#324) Add Google-style docstrings with Args, Returns, Raises, Attributes, and Example sections to MCPMessageType, MCPAdapter, and MCPServer classes. Also enhances docstrings for key methods including handle_message, _handle_tools_call, _handle_resources_read, and _map_tool_to_action. Fixes #316 * ci: add markdown link checker workflow (#323) Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com> * feat: add policy evaluation heatmap to SRE dashboard (#309) (#326) * fix: remove unregistered PyPI packages from notebooks and requirements (dependency confusion) (#325) - Replace !pip install agent-os with !pip install -e ../.. in all 6 notebooks; agent-os is not on PyPI and installing it from PyPI is a dependency confusion vector - Replace zendesk-sdk/freshdesk-sdk with zenpy/freshdesk (the real published SDKs) in customer-service/requirements.txt - Remove hashlib-compat from healthcare-hipaa/requirements.txt; hashlib is stdlib and hashlib-compat is not a real PyPI package * fix(security): complete dependency confusion fix — replace all pip install agent-os with agent-os-kernel Replace all remaining instances of `pip install agent-os` (unregistered on PyPI) with `pip install agent-os-kernel` (the actual package) across docs, examples, TypeScript extensions, CLI source, tests, and SVG assets. Also fixes `pip install emk` references to point to `agent-os-kernel[full]` since emk is a submodule, not a standalone PyPI package. Completes the fix started in PR #325 which only covered notebooks. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: update framework star counts to current values Dify 65K→133K, AutoGen 42K→55K, CrewAI 28K→46K, Semantic Kernel 24K→27K, LangGraph 24K→27K, Haystack 22K→24K, Agent Framework 7.6K→8K. Added star counts for OpenAI Agents SDK (20K) and Google ADK (18K). Sorted by stars descending. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> --------- Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> Co-authored-by: Parsa Faraji Alamouti <165321600+parsa-faraji@users.noreply.github.com> Co-authored-by: Matt Van Horn <mvanhorn@users.noreply.github.com> Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com> Co-authored-by: Zeel Desai <72783325+zeel2104@users.noreply.github.com> Co-authored-by: Xavier Garceau-Aranda <xavier.garceau-aranda@posteo.net> * fix(security): replace unregistered package names + MD5→SHA-256 - agentmesh → agentmesh-platform (5 files) - agentmesh-governance → agent-governance-toolkit - agent-os-observability → agent-os-kernel[observability] - hashlib.md5 → hashlib.sha256 (3 files) Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> --------- Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> Co-authored-by: Parsa Faraji Alamouti <165321600+parsa-faraji@users.noreply.github.com> Co-authored-by: Matt Van Horn <mvanhorn@users.noreply.github.com> Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com> Co-authored-by: Zeel Desai <72783325+zeel2104@users.noreply.github.com> Co-authored-by: Xavier Garceau-Aranda <xavier.garceau-aranda@posteo.net>

* docs: add testing guide for external testers and customers Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: add regulatory alignment table and Purview positioning to README Add EU AI Act, Colorado AI Act, and GPAI obligations timeline with AGT coverage mapping. Reference Microsoft Purview DSPM for AI as complementary data governance layer. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix(ci): restore read-all at workflow level for Scorecard verification The Scorecard API rejects workflows with write permissions at the workflow level. id-token: write and security-events: write must be scoped to the job level only. Restores permissions: read-all at workflow level while keeping job-level write permissions intact. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: add comprehensive docstrings to mcp_adapter.py classes (#324) Add Google-style docstrings with Args, Returns, Raises, Attributes, and Example sections to MCPMessageType, MCPAdapter, and MCPServer classes. Also enhances docstrings for key methods including handle_message, _handle_tools_call, _handle_resources_read, and _map_tool_to_action. Fixes #316 * ci: add markdown link checker workflow (#323) Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com> * feat: add policy evaluation heatmap to SRE dashboard (#309) (#326) * fix: remove unregistered PyPI packages from notebooks and requirements (dependency confusion) (#325) - Replace !pip install agent-os with !pip install -e ../.. in all 6 notebooks; agent-os is not on PyPI and installing it from PyPI is a dependency confusion vector - Replace zendesk-sdk/freshdesk-sdk with zenpy/freshdesk (the real published SDKs) in customer-service/requirements.txt - Remove hashlib-compat from healthcare-hipaa/requirements.txt; hashlib is stdlib and hashlib-compat is not a real PyPI package * fix(security): complete dependency confusion fix — replace all pip install agent-os with agent-os-kernel Replace all remaining instances of `pip install agent-os` (unregistered on PyPI) with `pip install agent-os-kernel` (the actual package) across docs, examples, TypeScript extensions, CLI source, tests, and SVG assets. Also fixes `pip install emk` references to point to `agent-os-kernel[full]` since emk is a submodule, not a standalone PyPI package. Completes the fix started in PR #325 which only covered notebooks. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: update framework star counts to current values Dify 65K→133K, AutoGen 42K→55K, CrewAI 28K→46K, Semantic Kernel 24K→27K, LangGraph 24K→27K, Haystack 22K→24K, Agent Framework 7.6K→8K. Added star counts for OpenAI Agents SDK (20K) and Google ADK (18K). Sorted by stars descending. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: refresh proposal status fields to reflect current state Update Status fields across all 8 proposal documents: - DIFY: Shipped (PR #2060, live on Marketplace) - GITHUB-COPILOT: Shipped (all 3 PRs merged) - MAF: Implemented Level 1 (18 tests, awaiting MAF team) - MCP: Partially Shipped (npm + Glama, registry pending) - OPENLIT: Implemented (PR #1062 under review) - CSA-ATF: Active (ATF author engaged, conformance spec published) - AAIF: Paused (re-submit after public release) - GOOGLE-ADK: Implemented (GovernanceAdapter shipped) Added Progress section to CSA-ATF-PROPOSAL.md with timeline. * docs: create 5 new proposals, update proposals index New proposals for shipped/active engagements: - HAYSTACK-INTEGRATION-PROPOSAL.md (shipped) - ORACLE-AGENTSPEC-PROPOSAL.md (active engagement) - STRIPE-MPP-PROPOSAL.md (planned) - NEXUS-TRUST-EXCHANGE-PROPOSAL.md (pre-alpha) - A2A-TRUST-EXTENSIONS-PROPOSAL.md (adapter shipped) Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> --------- Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> Co-authored-by: Parsa Faraji Alamouti <165321600+parsa-faraji@users.noreply.github.com> Co-authored-by: Matt Van Horn <mvanhorn@users.noreply.github.com> Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com> Co-authored-by: Zeel Desai <72783325+zeel2104@users.noreply.github.com> Co-authored-by: Xavier Garceau-Aranda <xavier.garceau-aranda@posteo.net>

) * docs: add testing guide for external testers and customers Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: add regulatory alignment table and Purview positioning to README Add EU AI Act, Colorado AI Act, and GPAI obligations timeline with AGT coverage mapping. Reference Microsoft Purview DSPM for AI as complementary data governance layer. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix(ci): restore read-all at workflow level for Scorecard verification The Scorecard API rejects workflows with write permissions at the workflow level. id-token: write and security-events: write must be scoped to the job level only. Restores permissions: read-all at workflow level while keeping job-level write permissions intact. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: add comprehensive docstrings to mcp_adapter.py classes (#324) Add Google-style docstrings with Args, Returns, Raises, Attributes, and Example sections to MCPMessageType, MCPAdapter, and MCPServer classes. Also enhances docstrings for key methods including handle_message, _handle_tools_call, _handle_resources_read, and _map_tool_to_action. Fixes #316 * ci: add markdown link checker workflow (#323) Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com> * feat: add policy evaluation heatmap to SRE dashboard (#309) (#326) * fix: remove unregistered PyPI packages from notebooks and requirements (dependency confusion) (#325) - Replace !pip install agent-os with !pip install -e ../.. in all 6 notebooks; agent-os is not on PyPI and installing it from PyPI is a dependency confusion vector - Replace zendesk-sdk/freshdesk-sdk with zenpy/freshdesk (the real published SDKs) in customer-service/requirements.txt - Remove hashlib-compat from healthcare-hipaa/requirements.txt; hashlib is stdlib and hashlib-compat is not a real PyPI package * fix(security): complete dependency confusion fix — replace all pip install agent-os with agent-os-kernel Replace all remaining instances of `pip install agent-os` (unregistered on PyPI) with `pip install agent-os-kernel` (the actual package) across docs, examples, TypeScript extensions, CLI source, tests, and SVG assets. Also fixes `pip install emk` references to point to `agent-os-kernel[full]` since emk is a submodule, not a standalone PyPI package. Completes the fix started in PR #325 which only covered notebooks. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: update framework star counts to current values Dify 65K→133K, AutoGen 42K→55K, CrewAI 28K→46K, Semantic Kernel 24K→27K, LangGraph 24K→27K, Haystack 22K→24K, Agent Framework 7.6K→8K. Added star counts for OpenAI Agents SDK (20K) and Google ADK (18K). Sorted by stars descending. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * feat(security): add dependency confusion pre-commit hook + weekly audit CI - scripts/check_dependency_confusion.py: Pre-commit hook that scans for pip install commands referencing unregistered PyPI packages. Maintains an allowlist of known registered packages. - .github/workflows/weekly-security-audit.yml: Weekly CI job running dependency confusion scan, security skills scan, and weak crypto check. Uploads reports as artifacts with 90-day retention. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix(security): proactive audit — dependency confusion + MD5→SHA-256 (#349) * docs: add testing guide for external testers and customers Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: add regulatory alignment table and Purview positioning to README Add EU AI Act, Colorado AI Act, and GPAI obligations timeline with AGT coverage mapping. Reference Microsoft Purview DSPM for AI as complementary data governance layer. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix(ci): restore read-all at workflow level for Scorecard verification The Scorecard API rejects workflows with write permissions at the workflow level. id-token: write and security-events: write must be scoped to the job level only. Restores permissions: read-all at workflow level while keeping job-level write permissions intact. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: add comprehensive docstrings to mcp_adapter.py classes (#324) Add Google-style docstrings with Args, Returns, Raises, Attributes, and Example sections to MCPMessageType, MCPAdapter, and MCPServer classes. Also enhances docstrings for key methods including handle_message, _handle_tools_call, _handle_resources_read, and _map_tool_to_action. Fixes #316 * ci: add markdown link checker workflow (#323) Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com> * feat: add policy evaluation heatmap to SRE dashboard (#309) (#326) * fix: remove unregistered PyPI packages from notebooks and requirements (dependency confusion) (#325) - Replace !pip install agent-os with !pip install -e ../.. in all 6 notebooks; agent-os is not on PyPI and installing it from PyPI is a dependency confusion vector - Replace zendesk-sdk/freshdesk-sdk with zenpy/freshdesk (the real published SDKs) in customer-service/requirements.txt - Remove hashlib-compat from healthcare-hipaa/requirements.txt; hashlib is stdlib and hashlib-compat is not a real PyPI package * fix(security): complete dependency confusion fix — replace all pip install agent-os with agent-os-kernel Replace all remaining instances of `pip install agent-os` (unregistered on PyPI) with `pip install agent-os-kernel` (the actual package) across docs, examples, TypeScript extensions, CLI source, tests, and SVG assets. Also fixes `pip install emk` references to point to `agent-os-kernel[full]` since emk is a submodule, not a standalone PyPI package. Completes the fix started in PR #325 which only covered notebooks. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: update framework star counts to current values Dify 65K→133K, AutoGen 42K→55K, CrewAI 28K→46K, Semantic Kernel 24K→27K, LangGraph 24K→27K, Haystack 22K→24K, Agent Framework 7.6K→8K. Added star counts for OpenAI Agents SDK (20K) and Google ADK (18K). Sorted by stars descending. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> --------- Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> Co-authored-by: Parsa Faraji Alamouti <165321600+parsa-faraji@users.noreply.github.com> Co-authored-by: Matt Van Horn <mvanhorn@users.noreply.github.com> Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com> Co-authored-by: Zeel Desai <72783325+zeel2104@users.noreply.github.com> Co-authored-by: Xavier Garceau-Aranda <xavier.garceau-aranda@posteo.net> * fix(security): replace unregistered package names + MD5→SHA-256 - agentmesh → agentmesh-platform (5 files) - agentmesh-governance → agent-governance-toolkit - agent-os-observability → agent-os-kernel[observability] - hashlib.md5 → hashlib.sha256 (3 files) Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix(security): dependency confusion in quickstart.ps1, bare excepts, MD5 deprecation CRITICAL: quickstart.ps1 referenced unregistered 'agent-os' PyPI name instead of 'agent-os-kernel'. Fixed to prevent supply chain attack. HIGH: 4 bare except: blocks in graph_debugger.py (2 duplicate files) replaced with specific exception types + logging. MEDIUM: MD5 and SHA1 deprecated with warning in text_tool.py hash algorithm selection. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> --------- Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> Co-authored-by: Parsa Faraji Alamouti <165321600+parsa-faraji@users.noreply.github.com> Co-authored-by: Matt Van Horn <mvanhorn@users.noreply.github.com> Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com> Co-authored-by: Zeel Desai <72783325+zeel2104@users.noreply.github.com> Co-authored-by: Xavier Garceau-Aranda <xavier.garceau-aranda@posteo.net>

…[MSRC-111178] (#353) * docs: add testing guide for external testers and customers Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: add regulatory alignment table and Purview positioning to README Add EU AI Act, Colorado AI Act, and GPAI obligations timeline with AGT coverage mapping. Reference Microsoft Purview DSPM for AI as complementary data governance layer. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix(ci): restore read-all at workflow level for Scorecard verification The Scorecard API rejects workflows with write permissions at the workflow level. id-token: write and security-events: write must be scoped to the job level only. Restores permissions: read-all at workflow level while keeping job-level write permissions intact. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: add comprehensive docstrings to mcp_adapter.py classes (#324) Add Google-style docstrings with Args, Returns, Raises, Attributes, and Example sections to MCPMessageType, MCPAdapter, and MCPServer classes. Also enhances docstrings for key methods including handle_message, _handle_tools_call, _handle_resources_read, and _map_tool_to_action. Fixes #316 * ci: add markdown link checker workflow (#323) Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com> * feat: add policy evaluation heatmap to SRE dashboard (#309) (#326) * fix: remove unregistered PyPI packages from notebooks and requirements (dependency confusion) (#325) - Replace !pip install agent-os with !pip install -e ../.. in all 6 notebooks; agent-os is not on PyPI and installing it from PyPI is a dependency confusion vector - Replace zendesk-sdk/freshdesk-sdk with zenpy/freshdesk (the real published SDKs) in customer-service/requirements.txt - Remove hashlib-compat from healthcare-hipaa/requirements.txt; hashlib is stdlib and hashlib-compat is not a real PyPI package * fix(security): complete dependency confusion fix — replace all pip install agent-os with agent-os-kernel Replace all remaining instances of `pip install agent-os` (unregistered on PyPI) with `pip install agent-os-kernel` (the actual package) across docs, examples, TypeScript extensions, CLI source, tests, and SVG assets. Also fixes `pip install emk` references to point to `agent-os-kernel[full]` since emk is a submodule, not a standalone PyPI package. Completes the fix started in PR #325 which only covered notebooks. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: update framework star counts to current values Dify 65K→133K, AutoGen 42K→55K, CrewAI 28K→46K, Semantic Kernel 24K→27K, LangGraph 24K→27K, Haystack 22K→24K, Agent Framework 7.6K→8K. Added star counts for OpenAI Agents SDK (20K) and Google ADK (18K). Sorted by stars descending. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * feat(security): add dependency confusion pre-commit hook + weekly audit CI - scripts/check_dependency_confusion.py: Pre-commit hook that scans for pip install commands referencing unregistered PyPI packages. Maintains an allowlist of known registered packages. - .github/workflows/weekly-security-audit.yml: Weekly CI job running dependency confusion scan, security skills scan, and weak crypto check. Uploads reports as artifacts with 90-day retention. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix(security): proactive audit — dependency confusion + MD5→SHA-256 (#349) * docs: add testing guide for external testers and customers Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: add regulatory alignment table and Purview positioning to README Add EU AI Act, Colorado AI Act, and GPAI obligations timeline with AGT coverage mapping. Reference Microsoft Purview DSPM for AI as complementary data governance layer. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix(ci): restore read-all at workflow level for Scorecard verification The Scorecard API rejects workflows with write permissions at the workflow level. id-token: write and security-events: write must be scoped to the job level only. Restores permissions: read-all at workflow level while keeping job-level write permissions intact. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: add comprehensive docstrings to mcp_adapter.py classes (#324) Add Google-style docstrings with Args, Returns, Raises, Attributes, and Example sections to MCPMessageType, MCPAdapter, and MCPServer classes. Also enhances docstrings for key methods including handle_message, _handle_tools_call, _handle_resources_read, and _map_tool_to_action. Fixes #316 * ci: add markdown link checker workflow (#323) Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com> * feat: add policy evaluation heatmap to SRE dashboard (#309) (#326) * fix: remove unregistered PyPI packages from notebooks and requirements (dependency confusion) (#325) - Replace !pip install agent-os with !pip install -e ../.. in all 6 notebooks; agent-os is not on PyPI and installing it from PyPI is a dependency confusion vector - Replace zendesk-sdk/freshdesk-sdk with zenpy/freshdesk (the real published SDKs) in customer-service/requirements.txt - Remove hashlib-compat from healthcare-hipaa/requirements.txt; hashlib is stdlib and hashlib-compat is not a real PyPI package * fix(security): complete dependency confusion fix — replace all pip install agent-os with agent-os-kernel Replace all remaining instances of `pip install agent-os` (unregistered on PyPI) with `pip install agent-os-kernel` (the actual package) across docs, examples, TypeScript extensions, CLI source, tests, and SVG assets. Also fixes `pip install emk` references to point to `agent-os-kernel[full]` since emk is a submodule, not a standalone PyPI package. Completes the fix started in PR #325 which only covered notebooks. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: update framework star counts to current values Dify 65K→133K, AutoGen 42K→55K, CrewAI 28K→46K, Semantic Kernel 24K→27K, LangGraph 24K→27K, Haystack 22K→24K, Agent Framework 7.6K→8K. Added star counts for OpenAI Agents SDK (20K) and Google ADK (18K). Sorted by stars descending. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> --------- Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> Co-authored-by: Parsa Faraji Alamouti <165321600+parsa-faraji@users.noreply.github.com> Co-authored-by: Matt Van Horn <mvanhorn@users.noreply.github.com> Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com> Co-authored-by: Zeel Desai <72783325+zeel2104@users.noreply.github.com> Co-authored-by: Xavier Garceau-Aranda <xavier.garceau-aranda@posteo.net> * fix(security): replace unregistered package names + MD5→SHA-256 - agentmesh → agentmesh-platform (5 files) - agentmesh-governance → agent-governance-toolkit - agent-os-observability → agent-os-kernel[observability] - hashlib.md5 → hashlib.sha256 (3 files) Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix(security): harden pull_request_target workflows against fork RCE [MSRC-111178] Defense-in-depth hardening for all 6 AI agent workflows: - Explicit ref: base.sha on all checkout steps (was implicit default) - persist-credentials: false on all checkouts - Fork safety notices - Shallow clone (fetch-depth: 1) where full history not needed - Security header comments referencing MSRC case The core vulnerability (ref: head.sha checkout) was already removed in PR #303. These changes add belt-and-suspenders protection. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> --------- Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> Co-authored-by: Parsa Faraji Alamouti <165321600+parsa-faraji@users.noreply.github.com> Co-authored-by: Matt Van Horn <mvanhorn@users.noreply.github.com> Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com> Co-authored-by: Zeel Desai <72783325+zeel2104@users.noreply.github.com> Co-authored-by: Xavier Garceau-Aranda <xavier.garceau-aranda@posteo.net>

…to fallback (#354) * docs: add testing guide for external testers and customers Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: add regulatory alignment table and Purview positioning to README Add EU AI Act, Colorado AI Act, and GPAI obligations timeline with AGT coverage mapping. Reference Microsoft Purview DSPM for AI as complementary data governance layer. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix(ci): restore read-all at workflow level for Scorecard verification The Scorecard API rejects workflows with write permissions at the workflow level. id-token: write and security-events: write must be scoped to the job level only. Restores permissions: read-all at workflow level while keeping job-level write permissions intact. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: add comprehensive docstrings to mcp_adapter.py classes (#324) Add Google-style docstrings with Args, Returns, Raises, Attributes, and Example sections to MCPMessageType, MCPAdapter, and MCPServer classes. Also enhances docstrings for key methods including handle_message, _handle_tools_call, _handle_resources_read, and _map_tool_to_action. Fixes #316 * ci: add markdown link checker workflow (#323) Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com> * feat: add policy evaluation heatmap to SRE dashboard (#309) (#326) * fix: remove unregistered PyPI packages from notebooks and requirements (dependency confusion) (#325) - Replace !pip install agent-os with !pip install -e ../.. in all 6 notebooks; agent-os is not on PyPI and installing it from PyPI is a dependency confusion vector - Replace zendesk-sdk/freshdesk-sdk with zenpy/freshdesk (the real published SDKs) in customer-service/requirements.txt - Remove hashlib-compat from healthcare-hipaa/requirements.txt; hashlib is stdlib and hashlib-compat is not a real PyPI package * fix(security): complete dependency confusion fix — replace all pip install agent-os with agent-os-kernel Replace all remaining instances of `pip install agent-os` (unregistered on PyPI) with `pip install agent-os-kernel` (the actual package) across docs, examples, TypeScript extensions, CLI source, tests, and SVG assets. Also fixes `pip install emk` references to point to `agent-os-kernel[full]` since emk is a submodule, not a standalone PyPI package. Completes the fix started in PR #325 which only covered notebooks. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: update framework star counts to current values Dify 65K→133K, AutoGen 42K→55K, CrewAI 28K→46K, Semantic Kernel 24K→27K, LangGraph 24K→27K, Haystack 22K→24K, Agent Framework 7.6K→8K. Added star counts for OpenAI Agents SDK (20K) and Google ADK (18K). Sorted by stars descending. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * feat(security): add dependency confusion pre-commit hook + weekly audit CI - scripts/check_dependency_confusion.py: Pre-commit hook that scans for pip install commands referencing unregistered PyPI packages. Maintains an allowlist of known registered packages. - .github/workflows/weekly-security-audit.yml: Weekly CI job running dependency confusion scan, security skills scan, and weak crypto check. Uploads reports as artifacts with 90-day retention. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix(security): proactive audit — dependency confusion + MD5→SHA-256 (#349) * docs: add testing guide for external testers and customers Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: add regulatory alignment table and Purview positioning to README Add EU AI Act, Colorado AI Act, and GPAI obligations timeline with AGT coverage mapping. Reference Microsoft Purview DSPM for AI as complementary data governance layer. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix(ci): restore read-all at workflow level for Scorecard verification The Scorecard API rejects workflows with write permissions at the workflow level. id-token: write and security-events: write must be scoped to the job level only. Restores permissions: read-all at workflow level while keeping job-level write permissions intact. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: add comprehensive docstrings to mcp_adapter.py classes (#324) Add Google-style docstrings with Args, Returns, Raises, Attributes, and Example sections to MCPMessageType, MCPAdapter, and MCPServer classes. Also enhances docstrings for key methods including handle_message, _handle_tools_call, _handle_resources_read, and _map_tool_to_action. Fixes #316 * ci: add markdown link checker workflow (#323) Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com> * feat: add policy evaluation heatmap to SRE dashboard (#309) (#326) * fix: remove unregistered PyPI packages from notebooks and requirements (dependency confusion) (#325) - Replace !pip install agent-os with !pip install -e ../.. in all 6 notebooks; agent-os is not on PyPI and installing it from PyPI is a dependency confusion vector - Replace zendesk-sdk/freshdesk-sdk with zenpy/freshdesk (the real published SDKs) in customer-service/requirements.txt - Remove hashlib-compat from healthcare-hipaa/requirements.txt; hashlib is stdlib and hashlib-compat is not a real PyPI package * fix(security): complete dependency confusion fix — replace all pip install agent-os with agent-os-kernel Replace all remaining instances of `pip install agent-os` (unregistered on PyPI) with `pip install agent-os-kernel` (the actual package) across docs, examples, TypeScript extensions, CLI source, tests, and SVG assets. Also fixes `pip install emk` references to point to `agent-os-kernel[full]` since emk is a submodule, not a standalone PyPI package. Completes the fix started in PR #325 which only covered notebooks. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: update framework star counts to current values Dify 65K→133K, AutoGen 42K→55K, CrewAI 28K→46K, Semantic Kernel 24K→27K, LangGraph 24K→27K, Haystack 22K→24K, Agent Framework 7.6K→8K. Added star counts for OpenAI Agents SDK (20K) and Google ADK (18K). Sorted by stars descending. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> --------- Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> Co-authored-by: Parsa Faraji Alamouti <165321600+parsa-faraji@users.noreply.github.com> Co-authored-by: Matt Van Horn <mvanhorn@users.noreply.github.com> Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com> Co-authored-by: Zeel Desai <72783325+zeel2104@users.noreply.github.com> Co-authored-by: Xavier Garceau-Aranda <xavier.garceau-aranda@posteo.net> * fix(security): replace unregistered package names + MD5→SHA-256 - agentmesh → agentmesh-platform (5 files) - agentmesh-governance → agent-governance-toolkit - agent-os-observability → agent-os-kernel[observability] - hashlib.md5 → hashlib.sha256 (3 files) Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix(security): add SECURITY.md to all packages, harden langchain crypto fallback - Add SECURITY.md to 29 packages (9 main + 20 integrations) linking to root security reporting guidance - Harden langchain-agentmesh crypto fallback: emit SecurityWarning when cryptography package unavailable (simulation mode) - Add explicit SECURITY WARNING comments on fallback code paths Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> --------- Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> Co-authored-by: Parsa Faraji Alamouti <165321600+parsa-faraji@users.noreply.github.com> Co-authored-by: Matt Van Horn <mvanhorn@users.noreply.github.com> Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com> Co-authored-by: Zeel Desai <72783325+zeel2104@users.noreply.github.com> Co-authored-by: Xavier Garceau-Aranda <xavier.garceau-aranda@posteo.net>

…rmissions (#355) * docs: add testing guide for external testers and customers Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: add regulatory alignment table and Purview positioning to README Add EU AI Act, Colorado AI Act, and GPAI obligations timeline with AGT coverage mapping. Reference Microsoft Purview DSPM for AI as complementary data governance layer. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix(ci): restore read-all at workflow level for Scorecard verification The Scorecard API rejects workflows with write permissions at the workflow level. id-token: write and security-events: write must be scoped to the job level only. Restores permissions: read-all at workflow level while keeping job-level write permissions intact. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: add comprehensive docstrings to mcp_adapter.py classes (#324) Add Google-style docstrings with Args, Returns, Raises, Attributes, and Example sections to MCPMessageType, MCPAdapter, and MCPServer classes. Also enhances docstrings for key methods including handle_message, _handle_tools_call, _handle_resources_read, and _map_tool_to_action. Fixes #316 * ci: add markdown link checker workflow (#323) Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com> * feat: add policy evaluation heatmap to SRE dashboard (#309) (#326) * fix: remove unregistered PyPI packages from notebooks and requirements (dependency confusion) (#325) - Replace !pip install agent-os with !pip install -e ../.. in all 6 notebooks; agent-os is not on PyPI and installing it from PyPI is a dependency confusion vector - Replace zendesk-sdk/freshdesk-sdk with zenpy/freshdesk (the real published SDKs) in customer-service/requirements.txt - Remove hashlib-compat from healthcare-hipaa/requirements.txt; hashlib is stdlib and hashlib-compat is not a real PyPI package * fix(security): complete dependency confusion fix — replace all pip install agent-os with agent-os-kernel Replace all remaining instances of `pip install agent-os` (unregistered on PyPI) with `pip install agent-os-kernel` (the actual package) across docs, examples, TypeScript extensions, CLI source, tests, and SVG assets. Also fixes `pip install emk` references to point to `agent-os-kernel[full]` since emk is a submodule, not a standalone PyPI package. Completes the fix started in PR #325 which only covered notebooks. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: update framework star counts to current values Dify 65K→133K, AutoGen 42K→55K, CrewAI 28K→46K, Semantic Kernel 24K→27K, LangGraph 24K→27K, Haystack 22K→24K, Agent Framework 7.6K→8K. Added star counts for OpenAI Agents SDK (20K) and Google ADK (18K). Sorted by stars descending. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * feat(security): add dependency confusion pre-commit hook + weekly audit CI - scripts/check_dependency_confusion.py: Pre-commit hook that scans for pip install commands referencing unregistered PyPI packages. Maintains an allowlist of known registered packages. - .github/workflows/weekly-security-audit.yml: Weekly CI job running dependency confusion scan, security skills scan, and weak crypto check. Uploads reports as artifacts with 90-day retention. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix(security): proactive audit — dependency confusion + MD5→SHA-256 (#349) * docs: add testing guide for external testers and customers Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: add regulatory alignment table and Purview positioning to README Add EU AI Act, Colorado AI Act, and GPAI obligations timeline with AGT coverage mapping. Reference Microsoft Purview DSPM for AI as complementary data governance layer. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix(ci): restore read-all at workflow level for Scorecard verification The Scorecard API rejects workflows with write permissions at the workflow level. id-token: write and security-events: write must be scoped to the job level only. Restores permissions: read-all at workflow level while keeping job-level write permissions intact. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: add comprehensive docstrings to mcp_adapter.py classes (#324) Add Google-style docstrings with Args, Returns, Raises, Attributes, and Example sections to MCPMessageType, MCPAdapter, and MCPServer classes. Also enhances docstrings for key methods including handle_message, _handle_tools_call, _handle_resources_read, and _map_tool_to_action. Fixes #316 * ci: add markdown link checker workflow (#323) Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com> * feat: add policy evaluation heatmap to SRE dashboard (#309) (#326) * fix: remove unregistered PyPI packages from notebooks and requirements (dependency confusion) (#325) - Replace !pip install agent-os with !pip install -e ../.. in all 6 notebooks; agent-os is not on PyPI and installing it from PyPI is a dependency confusion vector - Replace zendesk-sdk/freshdesk-sdk with zenpy/freshdesk (the real published SDKs) in customer-service/requirements.txt - Remove hashlib-compat from healthcare-hipaa/requirements.txt; hashlib is stdlib and hashlib-compat is not a real PyPI package * fix(security): complete dependency confusion fix — replace all pip install agent-os with agent-os-kernel Replace all remaining instances of `pip install agent-os` (unregistered on PyPI) with `pip install agent-os-kernel` (the actual package) across docs, examples, TypeScript extensions, CLI source, tests, and SVG assets. Also fixes `pip install emk` references to point to `agent-os-kernel[full]` since emk is a submodule, not a standalone PyPI package. Completes the fix started in PR #325 which only covered notebooks. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: update framework star counts to current values Dify 65K→133K, AutoGen 42K→55K, CrewAI 28K→46K, Semantic Kernel 24K→27K, LangGraph 24K→27K, Haystack 22K→24K, Agent Framework 7.6K→8K. Added star counts for OpenAI Agents SDK (20K) and Google ADK (18K). Sorted by stars descending. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> --------- Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> Co-authored-by: Parsa Faraji Alamouti <165321600+parsa-faraji@users.noreply.github.com> Co-authored-by: Matt Van Horn <mvanhorn@users.noreply.github.com> Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com> Co-authored-by: Zeel Desai <72783325+zeel2104@users.noreply.github.com> Co-authored-by: Xavier Garceau-Aranda <xavier.garceau-aranda@posteo.net> * fix(security): replace unregistered package names + MD5→SHA-256 - agentmesh → agentmesh-platform (5 files) - agentmesh-governance → agent-governance-toolkit - agent-os-observability → agent-os-kernel[observability] - hashlib.md5 → hashlib.sha256 (3 files) Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix(deps): bump cryptography>=45.0.3, migrate PyPDF2→pypdf, scope workflow permissions Vulnerability fixes: - cryptography: bump minimum to >=45.0.3 (fixes GHSA-3ww4, GHSA-9v9h, GHSA-h4gh, GHSA-jm77, GHSA-r6ph, GHSA-v8gr) - PyPDF2: migrate to pypdf>=6.8.0 (fixes GHSA-4vvm, GHSA-hqmh, GHSA-qpxp) - nltk: add upper bound <4.0 (3.9.3 already patched) - black: bump to >=25.1.0 (fixes GHSA-3936) Workflow permissions: - ai-release-notes.yml: move contents:write to job level - ai-spec-drafter.yml: move contents:write to job level Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> --------- Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> Co-authored-by: Parsa Faraji Alamouti <165321600+parsa-faraji@users.noreply.github.com> Co-authored-by: Matt Van Horn <mvanhorn@users.noreply.github.com> Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com> Co-authored-by: Zeel Desai <72783325+zeel2104@users.noreply.github.com> Co-authored-by: Xavier Garceau-Aranda <xavier.garceau-aranda@posteo.net>

* docs: add testing guide for external testers and customers Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: add regulatory alignment table and Purview positioning to README Add EU AI Act, Colorado AI Act, and GPAI obligations timeline with AGT coverage mapping. Reference Microsoft Purview DSPM for AI as complementary data governance layer. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix(ci): restore read-all at workflow level for Scorecard verification The Scorecard API rejects workflows with write permissions at the workflow level. id-token: write and security-events: write must be scoped to the job level only. Restores permissions: read-all at workflow level while keeping job-level write permissions intact. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: add comprehensive docstrings to mcp_adapter.py classes (#324) Add Google-style docstrings with Args, Returns, Raises, Attributes, and Example sections to MCPMessageType, MCPAdapter, and MCPServer classes. Also enhances docstrings for key methods including handle_message, _handle_tools_call, _handle_resources_read, and _map_tool_to_action. Fixes #316 * ci: add markdown link checker workflow (#323) Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com> * feat: add policy evaluation heatmap to SRE dashboard (#309) (#326) * fix: remove unregistered PyPI packages from notebooks and requirements (dependency confusion) (#325) - Replace !pip install agent-os with !pip install -e ../.. in all 6 notebooks; agent-os is not on PyPI and installing it from PyPI is a dependency confusion vector - Replace zendesk-sdk/freshdesk-sdk with zenpy/freshdesk (the real published SDKs) in customer-service/requirements.txt - Remove hashlib-compat from healthcare-hipaa/requirements.txt; hashlib is stdlib and hashlib-compat is not a real PyPI package * fix(security): complete dependency confusion fix — replace all pip install agent-os with agent-os-kernel Replace all remaining instances of `pip install agent-os` (unregistered on PyPI) with `pip install agent-os-kernel` (the actual package) across docs, examples, TypeScript extensions, CLI source, tests, and SVG assets. Also fixes `pip install emk` references to point to `agent-os-kernel[full]` since emk is a submodule, not a standalone PyPI package. Completes the fix started in PR #325 which only covered notebooks. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: update framework star counts to current values Dify 65K→133K, AutoGen 42K→55K, CrewAI 28K→46K, Semantic Kernel 24K→27K, LangGraph 24K→27K, Haystack 22K→24K, Agent Framework 7.6K→8K. Added star counts for OpenAI Agents SDK (20K) and Google ADK (18K). Sorted by stars descending. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * feat(security): add dependency confusion pre-commit hook + weekly audit CI - scripts/check_dependency_confusion.py: Pre-commit hook that scans for pip install commands referencing unregistered PyPI packages. Maintains an allowlist of known registered packages. - .github/workflows/weekly-security-audit.yml: Weekly CI job running dependency confusion scan, security skills scan, and weak crypto check. Uploads reports as artifacts with 90-day retention. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix(security): proactive audit — dependency confusion + MD5→SHA-256 (#349) * docs: add testing guide for external testers and customers Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: add regulatory alignment table and Purview positioning to README Add EU AI Act, Colorado AI Act, and GPAI obligations timeline with AGT coverage mapping. Reference Microsoft Purview DSPM for AI as complementary data governance layer. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix(ci): restore read-all at workflow level for Scorecard verification The Scorecard API rejects workflows with write permissions at the workflow level. id-token: write and security-events: write must be scoped to the job level only. Restores permissions: read-all at workflow level while keeping job-level write permissions intact. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: add comprehensive docstrings to mcp_adapter.py classes (#324) Add Google-style docstrings with Args, Returns, Raises, Attributes, and Example sections to MCPMessageType, MCPAdapter, and MCPServer classes. Also enhances docstrings for key methods including handle_message, _handle_tools_call, _handle_resources_read, and _map_tool_to_action. Fixes #316 * ci: add markdown link checker workflow (#323) Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com> * feat: add policy evaluation heatmap to SRE dashboard (#309) (#326) * fix: remove unregistered PyPI packages from notebooks and requirements (dependency confusion) (#325) - Replace !pip install agent-os with !pip install -e ../.. in all 6 notebooks; agent-os is not on PyPI and installing it from PyPI is a dependency confusion vector - Replace zendesk-sdk/freshdesk-sdk with zenpy/freshdesk (the real published SDKs) in customer-service/requirements.txt - Remove hashlib-compat from healthcare-hipaa/requirements.txt; hashlib is stdlib and hashlib-compat is not a real PyPI package * fix(security): complete dependency confusion fix — replace all pip install agent-os with agent-os-kernel Replace all remaining instances of `pip install agent-os` (unregistered on PyPI) with `pip install agent-os-kernel` (the actual package) across docs, examples, TypeScript extensions, CLI source, tests, and SVG assets. Also fixes `pip install emk` references to point to `agent-os-kernel[full]` since emk is a submodule, not a standalone PyPI package. Completes the fix started in PR #325 which only covered notebooks. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: update framework star counts to current values Dify 65K→133K, AutoGen 42K→55K, CrewAI 28K→46K, Semantic Kernel 24K→27K, LangGraph 24K→27K, Haystack 22K→24K, Agent Framework 7.6K→8K. Added star counts for OpenAI Agents SDK (20K) and Google ADK (18K). Sorted by stars descending. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> --------- Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> Co-authored-by: Parsa Faraji Alamouti <165321600+parsa-faraji@users.noreply.github.com> Co-authored-by: Matt Van Horn <mvanhorn@users.noreply.github.com> Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com> Co-authored-by: Zeel Desai <72783325+zeel2104@users.noreply.github.com> Co-authored-by: Xavier Garceau-Aranda <xavier.garceau-aranda@posteo.net> * fix(security): replace unregistered package names + MD5→SHA-256 - agentmesh → agentmesh-platform (5 files) - agentmesh-governance → agent-governance-toolkit - agent-os-observability → agent-os-kernel[observability] - hashlib.md5 → hashlib.sha256 (3 files) Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix(scorecard): remove explicit ref in pull_request_target, add sigstore, pin CI deps Dangerous-Workflow: Remove ref: base.sha from pull_request_target workflows — default checkout IS the base branch, explicit ref triggers Scorecard false positive. Security preserved via persist-credentials: false + MSRC comments. Signed-Releases: Add sigstore/gh-action-sigstore-python to publish workflow for Python package signing alongside existing attest-build-provenance. Pinned-Dependencies: Pin pip install versions in CI workflows: - ci.yml: pytest==8.4.1, pytest-asyncio==0.26.0 - benchmarks.yml: add --no-cache-dir - security-scan.yml: pyyaml==6.0.2 - weekly-security-audit.yml: pyyaml==6.0.2 Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> --------- Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> Co-authored-by: Parsa Faraji Alamouti <165321600+parsa-faraji@users.noreply.github.com> Co-authored-by: Matt Van Horn <mvanhorn@users.noreply.github.com> Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com> Co-authored-by: Zeel Desai <72783325+zeel2104@users.noreply.github.com> Co-authored-by: Xavier Garceau-Aranda <xavier.garceau-aranda@posteo.net>

…359) * docs: add testing guide for external testers and customers Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: add regulatory alignment table and Purview positioning to README Add EU AI Act, Colorado AI Act, and GPAI obligations timeline with AGT coverage mapping. Reference Microsoft Purview DSPM for AI as complementary data governance layer. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix(ci): restore read-all at workflow level for Scorecard verification The Scorecard API rejects workflows with write permissions at the workflow level. id-token: write and security-events: write must be scoped to the job level only. Restores permissions: read-all at workflow level while keeping job-level write permissions intact. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: add comprehensive docstrings to mcp_adapter.py classes (#324) Add Google-style docstrings with Args, Returns, Raises, Attributes, and Example sections to MCPMessageType, MCPAdapter, and MCPServer classes. Also enhances docstrings for key methods including handle_message, _handle_tools_call, _handle_resources_read, and _map_tool_to_action. Fixes #316 * ci: add markdown link checker workflow (#323) Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com> * feat: add policy evaluation heatmap to SRE dashboard (#309) (#326) * fix: remove unregistered PyPI packages from notebooks and requirements (dependency confusion) (#325) - Replace !pip install agent-os with !pip install -e ../.. in all 6 notebooks; agent-os is not on PyPI and installing it from PyPI is a dependency confusion vector - Replace zendesk-sdk/freshdesk-sdk with zenpy/freshdesk (the real published SDKs) in customer-service/requirements.txt - Remove hashlib-compat from healthcare-hipaa/requirements.txt; hashlib is stdlib and hashlib-compat is not a real PyPI package * fix(security): complete dependency confusion fix — replace all pip install agent-os with agent-os-kernel Replace all remaining instances of `pip install agent-os` (unregistered on PyPI) with `pip install agent-os-kernel` (the actual package) across docs, examples, TypeScript extensions, CLI source, tests, and SVG assets. Also fixes `pip install emk` references to point to `agent-os-kernel[full]` since emk is a submodule, not a standalone PyPI package. Completes the fix started in PR #325 which only covered notebooks. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: update framework star counts to current values Dify 65K→133K, AutoGen 42K→55K, CrewAI 28K→46K, Semantic Kernel 24K→27K, LangGraph 24K→27K, Haystack 22K→24K, Agent Framework 7.6K→8K. Added star counts for OpenAI Agents SDK (20K) and Google ADK (18K). Sorted by stars descending. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * feat(security): add dependency confusion pre-commit hook + weekly audit CI - scripts/check_dependency_confusion.py: Pre-commit hook that scans for pip install commands referencing unregistered PyPI packages. Maintains an allowlist of known registered packages. - .github/workflows/weekly-security-audit.yml: Weekly CI job running dependency confusion scan, security skills scan, and weak crypto check. Uploads reports as artifacts with 90-day retention. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix(security): proactive audit — dependency confusion + MD5→SHA-256 (#349) * docs: add testing guide for external testers and customers Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: add regulatory alignment table and Purview positioning to README Add EU AI Act, Colorado AI Act, and GPAI obligations timeline with AGT coverage mapping. Reference Microsoft Purview DSPM for AI as complementary data governance layer. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix(ci): restore read-all at workflow level for Scorecard verification The Scorecard API rejects workflows with write permissions at the workflow level. id-token: write and security-events: write must be scoped to the job level only. Restores permissions: read-all at workflow level while keeping job-level write permissions intact. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: add comprehensive docstrings to mcp_adapter.py classes (#324) Add Google-style docstrings with Args, Returns, Raises, Attributes, and Example sections to MCPMessageType, MCPAdapter, and MCPServer classes. Also enhances docstrings for key methods including handle_message, _handle_tools_call, _handle_resources_read, and _map_tool_to_action. Fixes #316 * ci: add markdown link checker workflow (#323) Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com> * feat: add policy evaluation heatmap to SRE dashboard (#309) (#326) * fix: remove unregistered PyPI packages from notebooks and requirements (dependency confusion) (#325) - Replace !pip install agent-os with !pip install -e ../.. in all 6 notebooks; agent-os is not on PyPI and installing it from PyPI is a dependency confusion vector - Replace zendesk-sdk/freshdesk-sdk with zenpy/freshdesk (the real published SDKs) in customer-service/requirements.txt - Remove hashlib-compat from healthcare-hipaa/requirements.txt; hashlib is stdlib and hashlib-compat is not a real PyPI package * fix(security): complete dependency confusion fix — replace all pip install agent-os with agent-os-kernel Replace all remaining instances of `pip install agent-os` (unregistered on PyPI) with `pip install agent-os-kernel` (the actual package) across docs, examples, TypeScript extensions, CLI source, tests, and SVG assets. Also fixes `pip install emk` references to point to `agent-os-kernel[full]` since emk is a submodule, not a standalone PyPI package. Completes the fix started in PR #325 which only covered notebooks. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: update framework star counts to current values Dify 65K→133K, AutoGen 42K→55K, CrewAI 28K→46K, Semantic Kernel 24K→27K, LangGraph 24K→27K, Haystack 22K→24K, Agent Framework 7.6K→8K. Added star counts for OpenAI Agents SDK (20K) and Google ADK (18K). Sorted by stars descending. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> --------- Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> Co-authored-by: Parsa Faraji Alamouti <165321600+parsa-faraji@users.noreply.github.com> Co-authored-by: Matt Van Horn <mvanhorn@users.noreply.github.com> Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com> Co-authored-by: Zeel Desai <72783325+zeel2104@users.noreply.github.com> Co-authored-by: Xavier Garceau-Aranda <xavier.garceau-aranda@posteo.net> * fix(security): replace unregistered package names + MD5→SHA-256 - agentmesh → agentmesh-platform (5 files) - agentmesh-governance → agent-governance-toolkit - agent-os-observability → agent-os-kernel[observability] - hashlib.md5 → hashlib.sha256 (3 files) Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * feat(esrp): configure ADO pipelines with Client ID and team contacts Fill ESRP pipeline placeholders with: - Client ID: a458522c-0359-4e92-9887-5fee1607c0c7 - Service connection: agt-esrp-release - Owners/Approvers: agt@microsoft.com TODO remaining (this week): - Key Vault name (pending PRSS cert generation) - Auth/Sign cert names (pending SAW access) Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> --------- Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> Co-authored-by: Parsa Faraji Alamouti <165321600+parsa-faraji@users.noreply.github.com> Co-authored-by: Matt Van Horn <mvanhorn@users.noreply.github.com> Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com> Co-authored-by: Zeel Desai <72783325+zeel2104@users.noreply.github.com> Co-authored-by: Xavier Garceau-Aranda <xavier.garceau-aranda@posteo.net>

…rosoft#356) * docs: add testing guide for external testers and customers Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: add regulatory alignment table and Purview positioning to README Add EU AI Act, Colorado AI Act, and GPAI obligations timeline with AGT coverage mapping. Reference Microsoft Purview DSPM for AI as complementary data governance layer. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix(ci): restore read-all at workflow level for Scorecard verification The Scorecard API rejects workflows with write permissions at the workflow level. id-token: write and security-events: write must be scoped to the job level only. Restores permissions: read-all at workflow level while keeping job-level write permissions intact. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: add comprehensive docstrings to mcp_adapter.py classes (microsoft#324) Add Google-style docstrings with Args, Returns, Raises, Attributes, and Example sections to MCPMessageType, MCPAdapter, and MCPServer classes. Also enhances docstrings for key methods including handle_message, _handle_tools_call, _handle_resources_read, and _map_tool_to_action. Fixes microsoft#316 * ci: add markdown link checker workflow (microsoft#323) Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com> * feat: add policy evaluation heatmap to SRE dashboard (microsoft#309) (microsoft#326) * fix: remove unregistered PyPI packages from notebooks and requirements (dependency confusion) (microsoft#325) - Replace !pip install agent-os with !pip install -e ../.. in all 6 notebooks; agent-os is not on PyPI and installing it from PyPI is a dependency confusion vector - Replace zendesk-sdk/freshdesk-sdk with zenpy/freshdesk (the real published SDKs) in customer-service/requirements.txt - Remove hashlib-compat from healthcare-hipaa/requirements.txt; hashlib is stdlib and hashlib-compat is not a real PyPI package * fix(security): complete dependency confusion fix — replace all pip install agent-os with agent-os-kernel Replace all remaining instances of `pip install agent-os` (unregistered on PyPI) with `pip install agent-os-kernel` (the actual package) across docs, examples, TypeScript extensions, CLI source, tests, and SVG assets. Also fixes `pip install emk` references to point to `agent-os-kernel[full]` since emk is a submodule, not a standalone PyPI package. Completes the fix started in PR microsoft#325 which only covered notebooks. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: update framework star counts to current values Dify 65K→133K, AutoGen 42K→55K, CrewAI 28K→46K, Semantic Kernel 24K→27K, LangGraph 24K→27K, Haystack 22K→24K, Agent Framework 7.6K→8K. Added star counts for OpenAI Agents SDK (20K) and Google ADK (18K). Sorted by stars descending. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * feat(security): add dependency confusion pre-commit hook + weekly audit CI - scripts/check_dependency_confusion.py: Pre-commit hook that scans for pip install commands referencing unregistered PyPI packages. Maintains an allowlist of known registered packages. - .github/workflows/weekly-security-audit.yml: Weekly CI job running dependency confusion scan, security skills scan, and weak crypto check. Uploads reports as artifacts with 90-day retention. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix(security): proactive audit — dependency confusion + MD5→SHA-256 (microsoft#349) * docs: add testing guide for external testers and customers Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: add regulatory alignment table and Purview positioning to README Add EU AI Act, Colorado AI Act, and GPAI obligations timeline with AGT coverage mapping. Reference Microsoft Purview DSPM for AI as complementary data governance layer. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix(ci): restore read-all at workflow level for Scorecard verification The Scorecard API rejects workflows with write permissions at the workflow level. id-token: write and security-events: write must be scoped to the job level only. Restores permissions: read-all at workflow level while keeping job-level write permissions intact. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: add comprehensive docstrings to mcp_adapter.py classes (microsoft#324) Add Google-style docstrings with Args, Returns, Raises, Attributes, and Example sections to MCPMessageType, MCPAdapter, and MCPServer classes. Also enhances docstrings for key methods including handle_message, _handle_tools_call, _handle_resources_read, and _map_tool_to_action. Fixes microsoft#316 * ci: add markdown link checker workflow (microsoft#323) Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com> * feat: add policy evaluation heatmap to SRE dashboard (microsoft#309) (microsoft#326) * fix: remove unregistered PyPI packages from notebooks and requirements (dependency confusion) (microsoft#325) - Replace !pip install agent-os with !pip install -e ../.. in all 6 notebooks; agent-os is not on PyPI and installing it from PyPI is a dependency confusion vector - Replace zendesk-sdk/freshdesk-sdk with zenpy/freshdesk (the real published SDKs) in customer-service/requirements.txt - Remove hashlib-compat from healthcare-hipaa/requirements.txt; hashlib is stdlib and hashlib-compat is not a real PyPI package * fix(security): complete dependency confusion fix — replace all pip install agent-os with agent-os-kernel Replace all remaining instances of `pip install agent-os` (unregistered on PyPI) with `pip install agent-os-kernel` (the actual package) across docs, examples, TypeScript extensions, CLI source, tests, and SVG assets. Also fixes `pip install emk` references to point to `agent-os-kernel[full]` since emk is a submodule, not a standalone PyPI package. Completes the fix started in PR microsoft#325 which only covered notebooks. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * docs: update framework star counts to current values Dify 65K→133K, AutoGen 42K→55K, CrewAI 28K→46K, Semantic Kernel 24K→27K, LangGraph 24K→27K, Haystack 22K→24K, Agent Framework 7.6K→8K. Added star counts for OpenAI Agents SDK (20K) and Google ADK (18K). Sorted by stars descending. Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> --------- Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> Co-authored-by: Parsa Faraji Alamouti <165321600+parsa-faraji@users.noreply.github.com> Co-authored-by: Matt Van Horn <mvanhorn@users.noreply.github.com> Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com> Co-authored-by: Zeel Desai <72783325+zeel2104@users.noreply.github.com> Co-authored-by: Xavier Garceau-Aranda <xavier.garceau-aranda@posteo.net> * fix(security): replace unregistered package names + MD5→SHA-256 - agentmesh → agentmesh-platform (5 files) - agentmesh-governance → agent-governance-toolkit - agent-os-observability → agent-os-kernel[observability] - hashlib.md5 → hashlib.sha256 (3 files) Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> * fix(scorecard): remove explicit ref in pull_request_target, add sigstore, pin CI deps Dangerous-Workflow: Remove ref: base.sha from pull_request_target workflows — default checkout IS the base branch, explicit ref triggers Scorecard false positive. Security preserved via persist-credentials: false + MSRC comments. Signed-Releases: Add sigstore/gh-action-sigstore-python to publish workflow for Python package signing alongside existing attest-build-provenance. Pinned-Dependencies: Pin pip install versions in CI workflows: - ci.yml: pytest==8.4.1, pytest-asyncio==0.26.0 - benchmarks.yml: add --no-cache-dir - security-scan.yml: pyyaml==6.0.2 - weekly-security-audit.yml: pyyaml==6.0.2 Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> --------- Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com> Co-authored-by: Parsa Faraji Alamouti <165321600+parsa-faraji@users.noreply.github.com> Co-authored-by: Matt Van Horn <mvanhorn@users.noreply.github.com> Co-authored-by: Matt Van Horn <455140+mvanhorn@users.noreply.github.com> Co-authored-by: Zeel Desai <72783325+zeel2104@users.noreply.github.com> Co-authored-by: Xavier Garceau-Aranda <xavier.garceau-aranda@posteo.net>

x4v13r64 requested a review from imran-siddique as a code owner March 21, 2026 08:49

github-actions bot added the dependencies Pull requests that update a dependency file label Mar 21, 2026

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imran-siddique merged commit 7d9ae14 into microsoft:main Mar 21, 2026
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fix(security): complete dependency confusion fix — all pip install agent-os replaced #328

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fix: remove unregistered PyPI packages from notebooks and requirements (dependency confusion)#325

fix: remove unregistered PyPI packages from notebooks and requirements (dependency confusion)#325
imran-siddique merged 1 commit intomicrosoft:mainfrom
x4v13r64:fix/remove-nonexistent-pypi-packages

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Security Review of PR: "fix: remove unregistered PyPI packages from notebooks and requirements (dependency confusion)"

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1. Dependency Confusion Mitigation

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🤖 AI Agent: code-reviewer

Pull Request Review: Dependency Confusion Mitigation

🔴 CRITICAL: Security Issues

💡 SUGGESTION: Notebook Usability Improvements

🟡 WARNING: Potential Breaking Changes

💡 SUGGESTION: Testing Enhancements

💡 SUGGESTION: Documentation Updates

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