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@iProzd iProzd commented Jun 4, 2025

Summary by CodeRabbit

  • Documentation
    • Updated user documentation and README to reflect support for both DPA-2 and DPA-3 models.
    • Added references to the DPA-3 model paper in the documentation and class descriptions for improved citation and clarity.

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coderabbitai bot commented Jun 4, 2025

📝 Walkthrough

Walkthrough

This update enhances documentation by adding a bibliographic reference to the DPA-3 descriptor in class docstrings and replacing a placeholder with the actual reference in the DPA-3 model documentation. The README is also updated to accurately list both DPA-2 and DPA-3 as supported models.

Changes

File(s) Change Summary
README.md Updated description to list both DPA-2 and DPA-3 models as supported.
deepmd/.../descriptor/dpa3.py (all variants: dpmodel, pd, pt) Extended DescrptDPA3 class docstring to include a reference citation and a "References" section.
doc/model/dpa3.md Replaced placeholder reference with an actual arXiv citation for the DPA-3 paper.

Sequence Diagram(s)

sequenceDiagram
    participant User
    participant Documentation
    participant Codebase

    User->>Documentation: Reads about DPA-3 model
    Documentation->>User: Shows updated reference to arXiv paper
    User->>Codebase: Reviews DPA-3 descriptor class
    Codebase->>User: Presents docstring with bibliographic citation
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Actionable comments posted: 0

🧹 Nitpick comments (1)
README.md (1)

79-79: Fix grammatical number
Change “- The DPA-2 and DPA-3 model.” to plural for consistency:

- - The DPA-2 and DPA-3 model.
+ - The DPA-2 and DPA-3 models.
🧰 Tools
🪛 LanguageTool

[uncategorized] ~79-~79: The grammatical number of this noun doesn’t look right. Consider replacing it.
Context: ...and JAX backends. - The DPA-2 and DPA-3 model. - Plugin mechanisms for external model...

(AI_EN_LECTOR_REPLACEMENT_NOUN_NUMBER)

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Reviewing files that changed from the base of the PR and between 9ef43fa and 24923c7.

📒 Files selected for processing (5)
  • README.md (1 hunks)
  • deepmd/dpmodel/descriptor/dpa3.py (2 hunks)
  • deepmd/pd/model/descriptor/dpa3.py (2 hunks)
  • deepmd/pt/model/descriptor/dpa3.py (2 hunks)
  • doc/model/dpa3.md (1 hunks)
🧰 Additional context used
🪛 LanguageTool
README.md

[uncategorized] ~79-~79: The grammatical number of this noun doesn’t look right. Consider replacing it.
Context: ...and JAX backends. - The DPA-2 and DPA-3 model. - Plugin mechanisms for external model...

(AI_EN_LECTOR_REPLACEMENT_NOUN_NUMBER)

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🔇 Additional comments (7)
doc/model/dpa3.md (1)

14-14: Actual reference added
The placeholder text has been replaced with the arXiv link for the DPA-3 paper. Documentation update is correct and aligns with class docstrings.

deepmd/pd/model/descriptor/dpa3.py (2)

66-66: Docstring reference marker added
Inserted [1]_ marker in the class docstring to link to the bibliographic entry.


98-102: New References section
Bibliographic citation for Zhang et al. (2025) added under “References”.

deepmd/pt/model/descriptor/dpa3.py (2)

66-66: Docstring reference marker added
Added [1]_ marker in the descriptor docstring to point to the new reference.


98-102: New References section
Included full bibliographic entry for the DPA-3 paper.

deepmd/dpmodel/descriptor/dpa3.py (2)

254-254: Docstring reference marker added
Updated the brief description to include [1]_ linking to the reference.


286-290: New References section
Added the reference block citing the arXiv preprint by Zhang et al. (2025).

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codecov bot commented Jun 4, 2025

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 84.80%. Comparing base (9ef43fa) to head (ff62149).
⚠️ Report is 85 commits behind head on devel.

Additional details and impacted files
@@            Coverage Diff             @@
##            devel    #4781      +/-   ##
==========================================
- Coverage   84.80%   84.80%   -0.01%     
==========================================
  Files         698      698              
  Lines       67787    67787              
  Branches     3542     3543       +1     
==========================================
- Hits        57486    57484       -2     
  Misses       9168     9168              
- Partials     1133     1135       +2     

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@iProzd iProzd added this pull request to the merge queue Jun 5, 2025
Merged via the queue into deepmodeling:devel with commit 2731c5d Jun 5, 2025
60 checks passed
@iProzd iProzd deleted the D0604_dpa3_doc branch June 5, 2025 12:04
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