[FIX] remove StartTime field from motion.json as in spec change#359
Merged
sappelhoff merged 7 commits intobids-standard:bep029_motionfrom Feb 22, 2023
Merged
[FIX] remove StartTime field from motion.json as in spec change#359sappelhoff merged 7 commits intobids-standard:bep029_motionfrom
sappelhoff merged 7 commits intobids-standard:bep029_motionfrom
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Bep029 motion
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Mar 15, 2023
* Bep029 motion - Example systemvalidation (#347) * .json nesting style change, latency channel added * Updated to adhere to spec change, minor corrections. Motion.json contains fields from deprecated coordsys. Other minor differences result from updated version of FT data2bids. * Each tracksys has own json and channels * .json and channels.tsv bug fix, trim events Removed undefined field ExternalSoftwareVersions from motion.json Replaced undfined type values in motion channels.tsv Trimmed events.tsv filed that were too large * motion.json has now doi and funding info Added values for doi and funding fields in motion.json * Undoing mistaken changes to motion.json By mistake I had changed motion.json not dataset_description.json. Now correcting that. * eeg.json wrong fields also removed from body session * [ADD] dataset for dual motion capture systems, no brain imaging * [FIX] remove example dataset from this branch * [ADD] motion systemvalidation dataset * [FIX] smaller comments by @sappelhoff --------- Co-authored-by: sjeung <seinjeung@gmail.com> * tmp: use motion branch for master validation to be reverted before merging! * [ADD] Motion (BEP029): example data set "dualtask" (#329) * Add dual task data set * Update motion.json and channels.tsv motion.json has author names in correct format channels.tsv type column has "confidence" renamed to "misc" events are trimmed * Undoing change by mistake and doing the actual fix Authors, Funding, ReferenceAndLinks fields in dataset_description.json are now arrays. Removed wrongly added Authors field in motion.json and eeg.json files. * Update names in channel count fields * Remove headers from motion.tsv * Cut down number of participants For brevity only include 5 participants in the example. * Rename channel count json fields Multi run files were missing in the previous fix * Do not escape slashes * Delete ._.DS_Store * Update .gitignore * Remove invalid component entry * Added dualwalking data set to the main README --------- Co-authored-by: Stefan Appelhoff <stefan.appelhoff@mailbox.org> * Remove old version of SR data set (#349) * [ENH] Re-add spot rotation data set (#350) * added two motion datasets spotrotation: physical and virtual motion tracking and simultaneous eeg recording dualtask: multiple marker from optical system and simultaneous eeg recording * adjusted names * add stand session * Update participants.tsv * corrected file hierarchy * add example dataset motion_dualsystem_validation Example dataset for the BEP029 was added which includes 2 synchronised data recordings of optical motion capture and inertial measurement units * updated motion dualsystem example dataset * New files added to motion_dualsystem dataset * updated spotrotation and dualtask * updated dataset desc and participant json * empty motion.tsv files and added scans.json * .json nesting style change and latency channels added * Overall update. Deprecated coordsys, single tracksys is presented as array. * [FIX] Updated motion_dualsystem_validation dataset according to new BEP029 dev * Separate json and channel files for different tracksys * Remove other motion data sets than spot-rotation * Channel type fix and json extra field removal * Remove headers, use quaternions * Channel types in .json count fields updated * Cut down number of participants For brevity only include 5 participants in the example. * Remove escaped slashes * Add quat_prefix to quat components And modify wrong entries for components (latency, yaw) * Create README.md * Update README.md * Add motion_spotrotation to main README --------- Co-authored-by: Soeren <65068522+sgrothk@users.noreply.github.com> Co-authored-by: Julius Welzel <julius.welzel@gmail.com> Co-authored-by: Stefan Appelhoff <stefan.appelhoff@mailbox.org> * fix README * motion_systemvalidation - update bidsignore * remove bidsignore entirely from systemvalidation * Bep029 motion dualtask (#354) * Add dual task data set * Update motion.json and channels.tsv motion.json has author names in correct format channels.tsv type column has "confidence" renamed to "misc" events are trimmed * Undoing change by mistake and doing the actual fix Authors, Funding, ReferenceAndLinks fields in dataset_description.json are now arrays. Removed wrongly added Authors field in motion.json and eeg.json files. * Update names in channel count fields * Remove headers from motion.tsv * Cut down number of participants For brevity only include 5 participants in the example. * Rename channel count json fields Multi run files were missing in the previous fix * Do not escape slashes * Delete ._.DS_Store * Update .gitignore * Remove invalid component entry * Added dualwalking data set to the main README * Bidsignore (#351) * Removed patterns in bidsignore which do not correspond to actual files * Added ingored invalid file * Update readme and license * Fix typo in readme * Remove headers from motion.tsv * Update json field name One subject was missing from the last update * Replace invalid compnent entry with n/a Again a subject was missing from last touchup * Compnent column entry for latency channel is n/a * Compnent column entry for latency channel is n/a * Remove undefined fields from json of sub20 --------- Co-authored-by: Stefan Appelhoff <stefan.appelhoff@mailbox.org> Co-authored-by: Horea Christian <chr@chymera.eu> * [FIX] Fix column order in channels.tsv files (#358) * [FIX] reorder columns to match schema * add latest changes * fix dataset name in readme * Remove repeating entries in scans.tsv --------- Co-authored-by: Julius Welzel <julius.welzel@gmail.com> * table fences * [FIX] remove StartTime field from motion.json as in spec change (#359) * [FIX] reorder columns to match schema * add latest changes * fix dataset name in readme * Remove repeating entries in scans.tsv * StartTime is removed from spec --------- Co-authored-by: Julius Welzel <julius.welzel@gmail.com> * Update motion_dualtask/participants.json Include age range in "young" * Update motion_dualtask/participants.json Include age range in "old" * Switch back to master for ci now that validator merged. --------- Co-authored-by: jwelzel <52565341+JuliusWelzel@users.noreply.github.com> Co-authored-by: sjeung <seinjeung@gmail.com> Co-authored-by: Soeren <65068522+sgrothk@users.noreply.github.com> Co-authored-by: Julius Welzel <julius.welzel@gmail.com> Co-authored-by: Ross Blair <rosswilsonblair@gmail.com> Co-authored-by: Horea Christian <chr@chymera.eu> Co-authored-by: Julia Guiomar Niso Galán <guiomar.niso@ctb.upm.es>
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Removing StartTime field in some motion.json files as the field is removed from the spec.