Description

5000 lines removed 😮

Related Issues

#63

Additional Notes

• Making SQLite the default database for testing and local_server, now the old code is removed. HOWEVER, we will continue to use postgres in CI
• Removed assets and migrations related to old schema
• explicitly added DB adapters (postgres, mysql, microsoft sql server) to pyproject.toml
• consolidating testing session fixtures by creating a new contextmanager function, get_test_session, in database.py and adding conftest.py to assist with creating reusable testing fixtures
• removed all recordlinker.linkage code and tests, except for matchers, this was copied to recordlinker.linking.old_matchers (we need to port these methods before we can move them)
• removed old schema calls from the link-record API endpoint
• removed pyway helpers from recordlinker.utils
• renamed test_record_linkage to test_main (as its really just testing the API endpoints in main.py). Rewrote some of the tests to make use of the new client fixture.

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Checklist

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• I have ensured that the pull request is of a manageable size, allowing it to be reviewed within a single session.
• I have reviewed my changes to ensure they are clear, concise, and well-documented.
• I have updated the documentation, if applicable.
• I have added or updated test cases to cover my changes, if applicable.
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Checklist for Reviewers

Please review and complete the following checklist during the review process:

• The code follows best practices and conventions.
• The changes implement the desired functionality or fix the reported issue.
• The tests cover the new changes and pass successfully.
• Any potential edge cases or error scenarios have been considered.