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Charlotte Bunne
505 posts
Charlotte Bunne
@_bunnech
Assistant Professor at @EPFL in Computer Science and Life Sciences.
PostDoc at @Genentech and @Stanford. PhD at @ETH and @BroadInstitute.
- 📢 The @ETH_Rat has announced the appointment of two professors at EPFL. Congratulations to Charlotte Bunne @_bunnech and Wenzel Jakob @wenzeljakob. go.epfl.ch/56de35
- How does optimal transport allow us to study dynamical systems? How does it connect to control theory, flow matching, & diffusion models? How is it advancing molecular biology research? Find the answers in our tutorial! Recording, slides, & script under bunne.ch/ot_tutorial/.
- 🎉I defended my #PhD! 🧵Neural optimal transport for biomedicine? A thread below with the #thesis highlights! But first, a huge thank you to my advisors @arkrause and @cuturimarco, my committee @lucaspelkmans and @jure, and all collaborators for such an incredible adventure!
- How can we build an Al Virtual Cell 🔮🧬 that simulates all functions and interactions of a cell? How will it transform research and drive breakthroughs in programmable biology, drug discovery and personalized medicine? 🚀 Take a look at our Perspective! arxiv.org/pdf/2409.11654
- Our workshop on 'New Frontiers in Learning, Control, and Dynamical Systems' will take place at #ICML2023. Aim: to unravel mutual relationships across these disciplines and shed light on recent parallel developments! Stay tuned for updates! frontiers4lcd.github.io
- Our #ICLR2022 paper got featured in @MIT's news 🎉! In this work, we predict protein docking from unbound structures end-to-end by incorporating the inductive biases of pairwise SE(3)–equivariance and commutativity (arxiv.org/pdf/2111.07786…)! news.mit.edu/2022/ai-predic…
- I spoke with @Nature about the transformative potential of foundation models for biology—particularly in personalized medicine and clinical diagnostics. Take a look at the technologies to watch in 2025. An exciting year ahead in AI, biology and medicine!
- ✨Another edition of the Optimal Transport and Machine Learning workshop is taking place at #NeurIPS2023. 🚀Contribute your work on OT and theory, computation, deep learning, or applications until Sept 29 (otmlworkshop.github.io/call)! Details on speakers and schedule coming soon.
- ✨Excited to share our work on “AI-powered virtual tissues from spatial proteomics for clinical diagnostics and biomedical discovery” (arxiv.org/pdf/2501.06039…), building on our vision paper in @CellCellPress on multi-scale, multi-modal foundation models (shorturl.at/G2Dew).
- Excited about neural #optimaltransport methods for modeling #singlecell perturbation responses but wondering how to integrate cell birth and death? @frederikelubeck has the answer for you in the #AI4science workshop @NeurIPSConf! Join us in rooms 388 - 390.
- The #ELLISPhD application portal is now open! Apply to top #AI labs & supervisors in Europe with a single application, and choose from different areas & tracks. The call for applications: ellis.eu/news/ellis-phd… Deadline: 15 November 2024 #PhD #PhDProgram #MachineLearning #ML
- Join me at my poster #1035 in Hall J now to hear about conditional neural #optimaltransport with applications in single-cell biology.
- Check out our work on proximal optimal transport modeling of population dynamics (JKOnet) at the #TimeSeriesWorkshop at #ICML2021. Joint work with @Laetitia_Ppx, @arkrause, and @cuturimarco. 🧵 Paper: arxiv.org/pdf/2106.06345…
