Research

Here are some selected research interests and projects I have worked on / am working on.

Machine-learning for semi-empirical quantum-chemistry methods

Building machine-learning models for quantum-chemistry applications off of generalizable, semi-empirical QM methods can be used to improve their accuracy, generalization, and data-efficiency. Inspired by models like MOB-ML and OrbNet, we developed OrbitAll, an extension of the equivariant deep neural-network model extended to a broader set of chemical space by including spin-polarization and the ability to include implicit information about an external chemical environment to calculations.

links: OrbitAll arxiv

Machine-learning methods for analyzing observed dynamics from computational chemistry simulations

Molecular dynamics is used to study the properties of important chemical systems, such as biomolecules. The observed dynamics contain a lot of potentially useful information, but are often extremely high-dimensional and noisy. Using AI models to learn from observed dynamics could allow for insights into their structure and interactions, as well as provide a potentially useful representation that moves beyond static structure.

links: mldyn repo

Applied computational chemistry studies

I’ve worked with experimental collaborators on several projects applying theory and simulation to provide insights to experimental findings and observations.

Mechanistic calculations of an evolved tyrosine synthase

link to the paper

Static and dynamic calculations of proposed small molecule structure determined from MicroED

link to the paper