Will Stokes

Thanks, I appreciate the frank assessment of the original staden codebase. In addition to Phrap I'm also looking into AMOS which looks promising. I was originally contemplating using Lucy to clean my data before passing it to an assembler and am not yet sure how to best (or if I even need to) do that with AMOS. I have had some success with AMOS and am also looking into using samtools or htslib to convert from SAM to BAM or CRAM. I'm presently not dealing with NGS data but would like to future proof...

Hi, I'm looking into the feasibility of using the gap4 algorithm from C code. I understand the exp format and can already generate such files myself. I'm not looking into gap4 and and finding documentation like this: http://staden.sourceforge.net/scripting_manual/scripting_111.html to be a bit out of date. E.g. there is no io.c (it now appears to be io1.c) and I cannot find a mk directory or a gap4_defs.mk file. I have been exploring setting up a project to build a subset of the gap4 (and related...

port to qt5 and retinified most of interface

Thanks, I appreciate the quick reply and suggestion. Will Stokes Chief Software Architect...

Does Staden io_lib support reading FASTQ content into a Read object? If not, can...

Good to know. I'm using Windows 10 so it sounds like this is basically a bug in TortoiseSVN...

Excellent, this now working beautifully for me. I've removed all traces of io_lib...

Excellent, this now working beautifully for me. I've removed all traces of io_lib...