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over-representation, and expression analysis
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Designed to find pathways and network patterns related to cancer and other types of diseases
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[February 13, 2026] In their November 2025 NPJ Systems Biology and Applications paper “MarkerPredict: predicting clinically relevant predictive biomarkers with machine learning”, Veres et al. present MarkerPredict, a machine learning framework for identifying predictive biomarkers of targeted cancer therapies. The method integrates signaling network topology with protein disorder features, focusing on three-node motifs containing oncologic targets and intrinsically disordered proteins. ReactomeFI is used to define these motifs and shows the highest enrichment of IDP–target triangles among tested networks. MarkerPredict identified 2,084 candidate biomarkers, including LCK and ERK1, demonstrating the value of Reactome-derived network context for precision oncology.
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