Phylogenetic

software

Relevance Popularity Rating

MEGA

free

3,141

Tamura K, Peterson D, Peterson N, Stecher G, Nei M, and Kumar S

MEGA is an integrated tool for conducting automatic and manual sequence alignment, inferring phylogenetic...

manual sequence alignment, inferring phylogenetic trees, mining web-based

Geneious

2,083

Biomatters Ltd.

Geneious is a research tool designed for biologists and not computer...

Geneious is a research tool designed for biologists and not computer scientists

CLC Sequence Viewer

free

1,964

QIAGEN

CLC Sequence Viewer features Full integration of data input, data management...

interactive restriction site analysis, phylogenetics, or advanced

TreeView

free

1,962

Roderic D. M. Page

TreeView is a program to view phylogenetic trees in your computer. It can read and display...

to view phylogenetic trees in your computer. A phylogenetic

Jalview

free

1,747

The Barton Group

Jalview is a free program for multiple sequence alignment editing...

alignments, analyze them with phylogenetic trees and principal components

TreeView X

free

1,578

Roderic D. M. Page

TreeView X is an open source program to display phylogenetic trees on Linux, Unix, Mac OS X, and Windows platforms...

source program to display phylogenetic trees on Linux, Unix

CodonCode Aligner

1,427

CodonCode Corporation

CodonCode Aligner is a software program that targets genetics research, a domain with high complexity...

and deletions or generate phylogenetic trees and restriction maps

Unipro UGENE

free

1,302

Unipro, Russia

UGENE is a free cross-platform genome analysis suite. It works perfectly on Windows, Mac OS or Linux and requires...

IV and PSIPRED; -Phylogenetic analysis with Phylip...stereo mode support; -Phylogenetic

CLC Main Workbench

1,108

CLC bio, a QIAGEN Company.

CLC Main Workbench can be used for DNA, RNA, and protein sequence...

primer design, molecular cloning, phylogenetic analyses, etc

GeneStudio

582

GeneStudio, Inc.

GeneStudio™ Pro is our Molecular Biology Suite. Featuring: - SeqVerter™ - a sophisticated sequence viewer and converter...

GeneStudio™ Pro is a modern suite of molecular biology applications for the Windows platform

Mesquite

free

402

Mesquite Project

Mesquite is modular, extendible application for evolutionary biology, designed to help biologists...

emphasis is on phylogenetic analysis ...others do non-phylogenetic multivariate analysis. Mesquite

Dendroscope

free

310

Daniel H. Huson

Dendroscope is a platform-independent app written in Java...

enables conveniently to browse phylogenetic trees and networks

SplitsTree4

free

127

Center for Bioinformatics Tübingen

Given an alignment of sequences, a distance matrix or a set of trees, the program will compute...

for computing unrooted phylogenetic networks...will compute a phylogenetic tree or network

PhyloDraw

121

GA-LAB

TOPALi

free

Biomathematics & Statistics Scotland

TOPALi provides an intuitive graphical interface for working with existing...

including the creation of Phylogenetic trees, mosaic structure predictions

NeXplorer

free

astoltzfus, vivekgopalan

Nexplorer is a web-based phylogenetic browser, used to view and edit comparative data...

Nexplorer is a web-based phylogenetic browser

PAUP*

David Swofford

PAUP* is a new release of the software package for inference of evolutionary trees...

to infer phylogenetic relationships...comprehensive introduction to phylogenetic

TreeMe

SequentiX - Digital DNA Processing

TreeMe allows visualization, editing, and annotation of large phylogenetic...

and annotation of large phylogenetic trees

Fast PCR

free

PrimerDigital

The FastPCR software is an integrated tools environment that provides comprehensive...

common primers for phylogenetically related DNA sequences...each from phylogenetically

Xper2

free

LIS

computer-aided-identifXper2 and its associated tools is a plate-form dedicated to taxonomic descriptions...

biology: inventory of biodiversity, phylogenetic studies, ecology etc. During

Phylogenetic

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