Ben J Woodcroft
Ben J Woodcroft
Hi, Thanks for writing this excellent software. I used orator as part of some microbiology-related scientific computing. One thing that would help considerably in my deployment is being able to...
Hi, Trying to use dashing as it seems very useful, thanks. Not sure if this issue belongs here but on my system the bioconda install gives an illegal instruction error:...
Hi again, I've been using dashing as a prefilter for genome dereplication, since it is much faster than FastANI. I'd previously been using mash for this. I've noticed that some...
Making wasn't making.
I can count on one hand bioinformatics programs I actually like, and with these new arbitrary kmer sizes, swig, and bloom filters, Jellyfish is about to make it there. Really...
Hi Torsten, Small thing - from the doco ``` Usage: barrnap [options] chr.fa ``` But ``` barrnap-0.9) $ barrnap a.fna [barrnap] This is barrnap 0.9 [barrnap] Written by Torsten Seemann...
Hi, A feature request this is, I suppose. I'd like to get trimmed alignments for a subset of markers included in the GTDBtk set. Is it possible to output the...
Hi, Thanks for writing this very useful library. I've noticed that in the plots I generate that the labels are often so long that they overlap each other on consecutive...
Hi, Came across this running `make nonpareil-mpi`: ``` cd enveomics/ && make nonpareil-mpi make[1]: Entering directory '/tmp/guix-build-nonpareil-2.4.1-1.72ce3c9e.drv-0/source/enveomics' mpic++ -DENVEOMICS_MULTI_NODE universal.cpp -c -Wall -std=c++11 mpic++ -DENVEOMICS_MULTI_NODE multinode.cpp -c -Wall -std=c++11 mpic++...
Hi, On line https://github.com/rhysnewell/aviary/blob/9c27c7ef43aa7fadba7a6cbf6c0543dcc8371d41/aviary/modules/assembly/assembly.smk#L445 Shouldn't `--meta` be specified?