noriakis

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Results 4 issues of noriakis

Feature proposal: principal coordinate analysis

Dear @ncborcherding, Thank you for developing this useful library. I would like to propose a feature for principal coordinate analysis (PCoA), as some functions in scRepertoire have overlap measures comparing...

Use of Edge-Path bundling for plotting KEGG PATHWAY

The use of Edge-Path bundling could be useful in investigating the gene relationships within KEGG PATHWAY. Using `edgebundle` (or the other implementation?), a wrapper function for plotting a pathway, colored...

Added automatic W threshold

1 comment

I added an automatic W selection to reject null hypothesis, although the author of original paper stated that they typically recommend the threshold of 0.7 according to https://forum.qiime2.org/t/ancom-low-w-taxa-identified-as-significant-issues-workaround-ancom2-code-instructions/6040.

Show messages which files are being used by default in `pathway()` and `overlay_raw_map()`