Niema Moshiri
Niema Moshiri
Never mind, I changed `str()` to `.as_string('newick')`, and it seems to work now. Perhaps `__str__` has a bug?
Also, I wrote my own version of the `extract_tree_with_taxa` function that seems to be much faster than the original, in case anyone is interested in using it ```python def extract_tree_with_taxa(tree,...
Ah yes, this was a bug I found earlier but haven't fixed yet. It's interpreting "1" as 100% rather than a count. Can you try putting the proportion as a...
Implemented in (seemingly) every module, and it works up through the transmission network (at least for GEMF), need to fix the downstream stuff
> The more interesting point to consider is how you organize your execs. Typically, you don't want to do too much in an exec (like embedding your entire pipeline in...
Thank you, this was incredibly helpful! I do indeed have caching enabled, but I think the primary issue with the workflows I was running that caused the slowdown with separate...
Ah, thanks for the quick response! I ideally want it to be 32-bit, so I'll try recompiling from scratch. I'll add a comment with the results
I just tried compiling from `SteamworksPy.dll` from scratch from the command line using the Visual Studio tools (using Steamworks SDK 1.5.1), and I encounter the same behavior
+1, SAM output would be very much appreciated!
As a temporary workaround, you could theoretically use a named pipe, e.g. the following for your example: ```bash dragen-os -r /ref/dragmap -1 result.sam ```