🤖 I have created a release *beep* *boop*
---


##
[9.11.0](v9.10.1...v9.11.0)
(2025-09-05)


### Features

* add landing page to the report containing custom metadata defined with
a YTE yaml template
([#3452](#3452))
([c754d80](c754d80))
* Issue a warning when unsupported characters are used in wildcard names
([#1587](#1587))
([fa57355](fa57355))


### Bug Fixes

* avoid checking output files in immediate-submit mode
([#3569](#3569))
([58c42cf](58c42cf))
* clarify --keep-going flag help text to distinguish runtime vs DAG
construction errors
([#3705](#3705))
([a3a8ef4](a3a8ef4))
* enable docstring assignment in `use rule ... with:` block
([#3710](#3710))
([2191962](2191962))
* fix missing attribute error in greedy scheduler settings when using
touch, dryrun or immediate submit.
([6471004](6471004))
* only trigger script with CODE label
([#3707](#3707))
([2d01f8c](2d01f8c))
* parser.py incorrectly parsing multiline f-strings
([#3701](#3701))
([06ece76](06ece76))
* parsing ordinary yaml strings
([#3506](#3506))
([ddf334e](ddf334e))
* remove temp files when using checkpoints
([#3716](#3716))
([5ff3e20](5ff3e20))
* Restore python rules changes triggering reruns. (GH:
[#3213](#3213))
([#3485](#3485))
([2f663be](2f663be))
* unit testing
([#3680](#3680))
([06ba7e6](06ba7e6))
* use queue_input_wait_time when updating queue input jobs
([#3712](#3712))
([a945a19](a945a19))


### Documentation

* output files within output directories is an error
([#2848](#2848))
([#2913](#2913))
([37272e5](37272e5))

---
This PR was generated with [Release
Please](https://github.com/googleapis/release-please). See
[documentation](https://github.com/googleapis/release-please#release-please).

…G construction errors (snakemake#3705)

## Problem

The help text for the `--keep-going` flag was ambiguous about when it
applies:

```
"Go on with independent jobs if a job fails."
```

This could mislead users into thinking the flag applies to all types of
errors, including those during workflow parsing or DAG construction.
However, `--keep-going` only applies to runtime failures during job
execution, not to errors that occur earlier in the workflow setup phase.

## Solution

Updated the help text to explicitly clarify the scope and limitations:

```
"Go on with independent jobs if a job fails during execution. This only applies to runtime failures in job execution, not to errors during workflow parsing or DAG construction."
```

## Key Clarifications Added

1. **"during execution"** - Makes it clear this is about runtime, not
parse-time errors
2. **"runtime failures in job execution"** - Explicitly states the
intended scope
3. **"not to errors during workflow parsing or DAG construction"** -
Explicitly excludes DAG-building phase errors

## Impact

This change helps users understand that:
- ✅ Job execution failures (e.g., shell command errors, missing input
files) → `--keep-going` applies
- ❌ Workflow syntax errors, rule definition issues, DAG construction
problems → `--keep-going` does NOT apply

The change is purely cosmetic (help text only) and doesn't affect any
functionality. It provides better user guidance and prevents confusion
about when the flag is effective.

<!-- START COPILOT CODING AGENT TIPS -->
---

✨ Let Copilot coding agent [set things up for
you](https://github.com/snakemake/snakemake/issues/new?title=✨+Set+up+Copilot+instructions&body=Configure%20instructions%20for%20this%20repository%20as%20documented%20in%20%5BBest%20practices%20for%20Copilot%20coding%20agent%20in%20your%20repository%5D%28https://gh.io/copilot-coding-agent-tips%29%2E%0A%0A%3COnboard%20this%20repo%3E&assignees=copilot)
— coding agent works faster and does higher quality work when set up for
your repo.

---------

Co-authored-by: copilot-swe-agent[bot] <198982749+Copilot@users.noreply.github.com>
Co-authored-by: johanneskoester <1858646+johanneskoester@users.noreply.github.com>

🤖 I have created a release *beep* *boop*
---


##
[9.11.0](snakemake/snakemake@v9.10.1...v9.11.0)
(2025-09-05)


### Features

* add landing page to the report containing custom metadata defined with
a YTE yaml template
([snakemake#3452](snakemake#3452))
([c754d80](snakemake@c754d80))
* Issue a warning when unsupported characters are used in wildcard names
([snakemake#1587](snakemake#1587))
([fa57355](snakemake@fa57355))


### Bug Fixes

* avoid checking output files in immediate-submit mode
([snakemake#3569](snakemake#3569))
([58c42cf](snakemake@58c42cf))
* clarify --keep-going flag help text to distinguish runtime vs DAG
construction errors
([snakemake#3705](snakemake#3705))
([a3a8ef4](snakemake@a3a8ef4))
* enable docstring assignment in `use rule ... with:` block
([snakemake#3710](snakemake#3710))
([2191962](snakemake@2191962))
* fix missing attribute error in greedy scheduler settings when using
touch, dryrun or immediate submit.
([6471004](snakemake@6471004))
* only trigger script with CODE label
([snakemake#3707](snakemake#3707))
([2d01f8c](snakemake@2d01f8c))
* parser.py incorrectly parsing multiline f-strings
([snakemake#3701](snakemake#3701))
([06ece76](snakemake@06ece76))
* parsing ordinary yaml strings
([snakemake#3506](snakemake#3506))
([ddf334e](snakemake@ddf334e))
* remove temp files when using checkpoints
([snakemake#3716](snakemake#3716))
([5ff3e20](snakemake@5ff3e20))
* Restore python rules changes triggering reruns. (GH:
[snakemake#3213](snakemake#3213))
([snakemake#3485](snakemake#3485))
([2f663be](snakemake@2f663be))
* unit testing
([snakemake#3680](snakemake#3680))
([06ba7e6](snakemake@06ba7e6))
* use queue_input_wait_time when updating queue input jobs
([snakemake#3712](snakemake#3712))
([a945a19](snakemake@a945a19))


### Documentation

* output files within output directories is an error
([snakemake#2848](snakemake#2848))
([snakemake#2913](snakemake#2913))
([37272e5](snakemake@37272e5))

---
This PR was generated with [Release
Please](https://github.com/googleapis/release-please). See
[documentation](https://github.com/googleapis/release-please#release-please).