Walkthrough

The execute method of the Workflow class in snakemake/workflow.py has been refactored. A new boolean variable should_deploy_sources now encapsulates the conditions determining whether source files should be uploaded to storage. The logic for uploading sources and cleaning up the source archive has been reorganized to depend on this variable, clearly separating the condition from the action. No changes were made to any public or exported entities.

Changes

Sequence Diagram(s)

sequenceDiagram
    participant W as Workflow
    participant S as Storage
    participant C as Cleanup

    W->>W: Evaluate should_deploy_sources
    alt should_deploy_sources is true
        W->>S: Upload source files to storage
        W->>C: Clean up source archive
    else
        W->>W: Skip deployment and cleanup routines
    end

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