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feat: add first 5 rules to group name (used e.g. when naming cluster/cloud jobs or logfiles)#3168

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johanneskoester merged 1 commit intomainfrom
feat/readable_group_names
Oct 24, 2024
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feat: add first 5 rules to group name (used e.g. when naming cluster/cloud jobs or logfiles)#3168
johanneskoester merged 1 commit intomainfrom
feat/readable_group_names

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@johanneskoester johanneskoester commented Oct 24, 2024

fixes snakemake/snakemake-executor-plugin-slurm#154

QC

  • The PR contains a test case for the changes or the changes are already covered by an existing test case.
  • The documentation (docs/) is updated to reflect the changes or this is not necessary (e.g. if the change does neither modify the language nor the behavior or functionalities of Snakemake).

Summary by CodeRabbit

  • New Features

    • Enhanced the naming of group jobs to include associated rule names, improving readability and context.
    • Implemented truncation for long lists of rule names, ensuring clarity.
  • Bug Fixes

    • Minor adjustments made to the formatting of the group job's name for consistency.

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coderabbitai bot commented Oct 24, 2024

Walkthrough

The changes involve an update to the name property of the GroupJob class in the snakemake/jobs.py file. The previous implementation returned the group ID as a string, while the new implementation constructs a more informative string that includes the group ID and the names of associated rules, truncating the list if there are more than five unique rules. Minor formatting adjustments were also made to ensure consistency with the new naming logic. No other logic or control flow changes were introduced.

Changes

File Change Summary
snakemake/jobs.py Modified name property of GroupJob to include group ID and associated rule names, with truncation for more than five rules. Updated property signature to include return type. Minor formatting adjustments made.

Sequence Diagram(s)

sequenceDiagram
    participant GroupJob
    participant RuleManager

    GroupJob->>RuleManager: Request associated rule names
    RuleManager-->>GroupJob: Return list of rule names
    GroupJob->>GroupJob: Construct name string
    GroupJob->>GroupJob: Truncate if more than five rules
    GroupJob-->>Client: Return formatted name
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Actionable comments posted: 0

🧹 Outside diff range and nitpick comments (1)
snakemake/jobs.py (1)

1531-1534: LGTM! The implementation enhances group job name readability.

The changes improve the clarity of group job names by including up to 5 rule names, making it easier to identify the contents of group jobs in logs and monitoring tools.

Consider handling these edge cases in future improvements:

  1. Rule names containing underscores could make the group job name harder to parse
  2. Empty rule sets (though this should never happen in practice)
  3. Rule name sanitization (if not already handled elsewhere)
📜 Review details

Configuration used: CodeRabbit UI
Review profile: CHILL

📥 Commits

Files that changed from the base of the PR and between c6187a4 and d664d20.

📒 Files selected for processing (1)
  • snakemake/jobs.py (1 hunks)
🧰 Additional context used
📓 Path-based instructions (1)
snakemake/jobs.py (1)

Pattern **/*.py: Do not try to improve formatting.
Do not suggest type annotations for functions that are defined inside of functions or methods.
Do not suggest type annotation of the self argument of methods.
Do not suggest type annotation of the cls argument of classmethods.
Do not suggest return type annotation if a function or method does not contain a return statement.

@johanneskoester johanneskoester merged commit 5657122 into main Oct 24, 2024
@johanneskoester johanneskoester deleted the feat/readable_group_names branch October 24, 2024 10:49
johanneskoester pushed a commit that referenced this pull request Oct 29, 2024
🤖 I have created a release *beep* *boop*
---


##
[8.25.0](v8.24.1...v8.25.0)
(2024-10-29)


### Features

* add first 5 rules to group name (used e.g. when naming cluster/cloud
jobs or logfiles)
([#3168](#3168))
([5657122](5657122))
* allow to mark input files of rules as ancient via the API or command
line interface (and thereby also via workflow specific profiles).
Putting this into a workflow specific profile (or specifying as
argument) allows to overrule rerun triggers caused by file modification
dates where the user knows better.
([#3171](#3171))
([6f3aed3](6f3aed3))


### Bug Fixes

* skip storage object when cloning flags for shadowed IO
([#3174](#3174))
([d733fed](d733fed))
* use permission safe copying when hidden conda files are already
present in a workdir. This avoids problems in case multiple people use
the same workdir and workflow.
([#3169](#3169))
([c98b2e7](c98b2e7))


### Documentation

* add tutorial references and small syntax fix
([#3172](#3172))
([6bee12a](6bee12a))

---
This PR was generated with [Release
Please](https://github.com/googleapis/release-please). See
[documentation](https://github.com/googleapis/release-please#release-please).

Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
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slurm job name could be more informative

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