🤖 I have created a release *beep* *boop*
---


##
[8.26.0](v8.25.5...v8.26.0)
(2024-12-23)


### Features

* add helpers for deferred input/output etc. item access
([#2927](#2927))
([2cca9bc](2cca9bc))


### Bug Fixes

* convert parameters so they can be serialized
([#2925](#2925))
([9e653fb](9e653fb))
* correct formatting of R preamble
([#2425](#2425))
([5380cae](5380cae))
* fix modification checks for scripts and and notebooks containing
wildcards or params in their paths
([#2751](#2751))
([773568d](773568d))
* Improved handling of missing output files in group job postprocessing,
accounting for temporary files.
([#1765](#1765))
([bac06ba](bac06ba))
* mtime of script or notebook not triggering workflow without metadata
([#3148](#3148))
([e8a0b83](e8a0b83))
* Pass `host` attribute to `GitlabFile` instantiation within class
methods ([#3155](#3155))
([9ef52de](9ef52de))
* problem with spaces in path
([#3236](#3236))
([2d08c63](2d08c63))
* require current yte release which contains an important bug fix for
cases where numpy/pandas data is passed to templates
([#3227](#3227))
([c3339da](c3339da))
* rerun jobs if previously failed but rule was changed afterwards
(thanks to [@laf070810](https://github.com/laf070810) for bringing this
up) ([#3237](#3237))
([1dc0084](1dc0084))
* use relpath for configfiles added to the source archive (thanks to
[@sposadac](https://github.com/sposadac) for the initial solution)
([#3240](#3240))
([bff3844](bff3844))

---
This PR was generated with [Release
Please](https://github.com/googleapis/release-please). See
[documentation](https://github.com/googleapis/release-please#release-please).

Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>

### Description

Currently parameters given to the R script preamble do not work for some
(uncommon) cases:

- special float values (NaN, inf, -inf)
- complex numbers
- integers (type preserved)
- heterogeneous lists

These cases are corrected in this PR.

Heterogeneous lists are now supported by creating an R `list` instead of
a R `vector`, if the Python `list` contents are not from the same type.
Therefore, this change may break some workflows, if they rely on the R
script input being a vector or the implicitly converted types (e.g.
before this PR `TRUE` became `"TRUE"` if there is another string in the
list). In my opinion, I would regard the implicit type conversion a bug,
hence my change proposal.

### QC
<!-- Make sure that you can tick the boxes below. -->

* [x] The PR contains a test case for the changes or the changes are
already covered by an existing test case.
* [x] The documentation (`docs/`) is updated to reflect the changes or
this is not necessary (e.g. if the change does neither modify the
language nor the behavior or functionalities of Snakemake).

Co-authored-by: Johannes Koester <johannes.koester@uni-due.de>

🤖 I have created a release *beep* *boop*
---


##
[8.26.0](snakemake/snakemake@v8.25.5...v8.26.0)
(2024-12-23)


### Features

* add helpers for deferred input/output etc. item access
([snakemake#2927](snakemake#2927))
([2cca9bc](snakemake@2cca9bc))


### Bug Fixes

* convert parameters so they can be serialized
([snakemake#2925](snakemake#2925))
([9e653fb](snakemake@9e653fb))
* correct formatting of R preamble
([snakemake#2425](snakemake#2425))
([5380cae](snakemake@5380cae))
* fix modification checks for scripts and and notebooks containing
wildcards or params in their paths
([snakemake#2751](snakemake#2751))
([773568d](snakemake@773568d))
* Improved handling of missing output files in group job postprocessing,
accounting for temporary files.
([snakemake#1765](snakemake#1765))
([bac06ba](snakemake@bac06ba))
* mtime of script or notebook not triggering workflow without metadata
([snakemake#3148](snakemake#3148))
([e8a0b83](snakemake@e8a0b83))
* Pass `host` attribute to `GitlabFile` instantiation within class
methods ([snakemake#3155](snakemake#3155))
([9ef52de](snakemake@9ef52de))
* problem with spaces in path
([snakemake#3236](snakemake#3236))
([2d08c63](snakemake@2d08c63))
* require current yte release which contains an important bug fix for
cases where numpy/pandas data is passed to templates
([snakemake#3227](snakemake#3227))
([c3339da](snakemake@c3339da))
* rerun jobs if previously failed but rule was changed afterwards
(thanks to [@laf070810](https://github.com/laf070810) for bringing this
up) ([snakemake#3237](snakemake#3237))
([1dc0084](snakemake@1dc0084))
* use relpath for configfiles added to the source archive (thanks to
[@sposadac](https://github.com/sposadac) for the initial solution)
([snakemake#3240](snakemake#3240))
([bff3844](snakemake@bff3844))

---
This PR was generated with [Release
Please](https://github.com/googleapis/release-please). See
[documentation](https://github.com/googleapis/release-please#release-please).

Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>