fix: Adds fixes for the first two MREs in #823#1215
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johanneskoester merged 7 commits intosnakemake:mainfrom Oct 25, 2021
Merged
fix: Adds fixes for the first two MREs in #823#1215johanneskoester merged 7 commits intosnakemake:mainfrom
johanneskoester merged 7 commits intosnakemake:mainfrom
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- Incorporates @epruesse's fix for MRE snakemake#1 - Adds a fix for MRE snakemake#2 - properly marks group jobs as finished - Some minor updates to tests
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The tests seem to fail on windows for some reason. Can you have a look? |
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Kudos, SonarCloud Quality Gate passed!
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Contributor
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The second MRE was failing with due to the I think the piped output is required for reproducing the behavior in #823, so it seems appropriate to skip the Windows test for now. It should be OK to remove the |
pvandyken
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Nov 15, 2021
* add failing tests 823 * fix mistakes * black * Fix the first two MREs from snakemake#823. - Incorporates @epruesse's fix for MRE #1 - Adds a fix for MRE #2 - properly marks group jobs as finished - Some minor updates to tests * Fix tests on Windows * Skip MRE 2 from 823 on Windows due to `pipe()` output Co-authored-by: Maarten-vd-Sande <maartenvandersande@hotmail.com> Co-authored-by: Johannes Köster <johannes.koester@uni-due.de>
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Description
This PR extends @epruesse's fix in #1203. Importantly, it adds some changes to ensure that group jobs are marked finished, which fixes the second MRE in #823.
Together, the changes fix the first and second MREs in #823.
QC
docs/) is updated to reflect the changes or this is not necessary (e.g. if the change does neither modify the language nor the behavior or functionalities of Snakemake).