Main Idea

Setup pixi configuration in all interfaces and core plugins

• Add mypy type-checking and fix basic errors for now

choice of type-checker (mypy, pywright) can change and will hopefully be a drop-in replacement given the pixi task interface now

Interfaces

• snakemake-interface-common
  • feat: setup pixi, move to src layout, run ruff format once snakemake-interface-common#58
  • refactor: first iteration of fixing mypy complaints  snakemake-interface-common#59
• snakemake-interface-logger-plugins
  • feat: add pixi config  snakemake-interface-logger-plugins#18
  • ci: fix PyPI publishing process, enforce mypy types snakemake-interface-logger-plugins#20
• snakemake-interface-storage-plugins
  • feat: Integrate Pixi for improved CI/CD and update project configuration snakemake-interface-storage-plugins#64
• snakemake-interface-executor-plugins
  • chore: use Pixi for improved CI/CD and update project configuration snakemake-interface-executor-plugins#82
  • fix: address mypy issues snakemake-interface-executor-plugins#83

Plugins

are there important ones?