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base repository: snakemake/snakemake
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base: v8.5.5
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head repository: snakemake/snakemake
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compare: v8.6.0
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  • 9 commits
  • 25 files changed
  • 3 contributors

Commits on Mar 7, 2024

  1. fix: fix premature deletion of temp files in combination with checkpo…

    …ints (#2737)
    
    fixes #2732
    
    ### QC
    <!-- Make sure that you can tick the boxes below. -->
    
    * [x] The PR contains a test case for the changes or the changes are
    already covered by an existing test case.
    * [x] The documentation (`docs/`) is updated to reflect the changes or
    this is not necessary (e.g. if the change does neither modify the
    language nor the behavior or functionalities of Snakemake).
    johanneskoester authored Mar 7, 2024
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Commits on Mar 8, 2024

  1. chore: add testcase for ensuring that scheduler runs sequential if al…

    …l cores are requested by one job (#2740)
    
    ### Description
    
    <!--Add a description of your PR here-->
    
    ### QC
    <!-- Make sure that you can tick the boxes below. -->
    
    * [x] The PR contains a test case for the changes or the changes are
    already covered by an existing test case.
    * [x] The documentation (`docs/`) is updated to reflect the changes or
    this is not necessary (e.g. if the change does neither modify the
    language nor the behavior or functionalities of Snakemake).
    johanneskoester authored Mar 8, 2024
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  2. feat: allow passing of lists of functions or single functions to expa…

    …nd (#2741)
    
    ### Description
    
    <!--Add a description of your PR here-->
    
    ### QC
    <!-- Make sure that you can tick the boxes below. -->
    
    * [x] The PR contains a test case for the changes or the changes are
    already covered by an existing test case.
    * [x] The documentation (`docs/`) is updated to reflect the changes or
    this is not necessary (e.g. if the change does neither modify the
    language nor the behavior or functionalities of Snakemake).
    johanneskoester authored Mar 8, 2024
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Commits on Mar 11, 2024

  1. feat: add setting for defining separate local storage prefix for remo…

    …te jobs; improved ergonomics for semantic helper functions (#2743)
    
    ### Description
    
    <!--Add a description of your PR here-->
    
    ### QC
    <!-- Make sure that you can tick the boxes below. -->
    
    * [ ] The PR contains a test case for the changes or the changes are
    already covered by an existing test case.
    * [ ] The documentation (`docs/`) is updated to reflect the changes or
    this is not necessary (e.g. if the change does neither modify the
    language nor the behavior or functionalities of Snakemake).
    johanneskoester authored Mar 11, 2024
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  3. fix test

    johanneskoester committed Mar 11, 2024
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  4. fix test

    johanneskoester committed Mar 11, 2024
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  5. chore(main): release 8.6.0 (#2738)

    🤖 I have created a release *beep* *boop*
    ---
    
    
    ##
    [8.6.0](v8.5.5...v8.6.0)
    (2024-03-11)
    
    
    ### Features
    
    * add setting for defining separate local storage prefix for remote
    jobs; improved ergonomics for semantic helper functions
    ([#2743](#2743))
    ([5007e5c](5007e5c))
    * allow passing of lists of functions or single functions to expand
    ([#2741](#2741))
    ([32e65df](32e65df))
    
    
    ### Bug Fixes
    
    * fix error message for invalid storage provider queries
    ([977951e](977951e))
    * fix premature deletion of temp files in combination with checkpoints
    ([#2737](#2737))
    ([b22ba5f](b22ba5f))
    
    ---
    This PR was generated with [Release
    Please](https://github.com/googleapis/release-please). See
    [documentation](https://github.com/googleapis/release-please#release-please).
    
    Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
    github-actions[bot] authored Mar 11, 2024
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