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[MRG] Warns when reference can not be found.#13365

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adrinjalali merged 5 commits intoscikit-learn:masterfrom
thomasjpfan:sphinx_term_fix_2
Mar 3, 2019
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[MRG] Warns when reference can not be found.#13365
adrinjalali merged 5 commits intoscikit-learn:masterfrom
thomasjpfan:sphinx_term_fix_2

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@thomasjpfan
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  1. Warns when reference can not be found with single backticks.
  2. All glossary links will look like normal links (not bold).

@TomDLT
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TomDLT commented Mar 2, 2019

Cool ! For the record, we now have 992 new warnings when building the doc.
(WARNING: 'any' reference target not found:)

Details
/home/circleci/project/doc/auto_examples/classification/plot_classification_probability.rst:19: WARNING: 'any' reference target not found: probability=True
/home/circleci/project/doc/auto_examples/cluster/plot_face_compress.rst:14: WARNING: 'any' reference target not found: k
/home/circleci/project/doc/auto_examples/compose/plot_transformed_target.rst:65: WARNING: 'any' reference target not found: np.log1p
/home/circleci/project/doc/auto_examples/compose/plot_transformed_target.rst:65: WARNING: 'any' reference target not found: np.expm1
/home/circleci/project/doc/auto_examples/decomposition/plot_ica_blind_source_separation.rst:16: WARNING: 'any' reference target not found: instruments
/home/circleci/project/doc/auto_examples/ensemble/plot_bias_variance.rst:39: WARNING: 'any' reference target not found: 0.01
/home/circleci/project/doc/auto_examples/ensemble/plot_bias_variance.rst:45: WARNING: 'any' reference target not found: x=2
/home/circleci/project/doc/auto_examples/ensemble/plot_forest_iris.rst:35: WARNING: 'any' reference target not found: max_depth
/home/circleci/project/doc/auto_examples/ensemble/plot_gradient_boosting_early_stopping.rst:22: WARNING: 'any' reference target not found: tol
/home/circleci/project/doc/auto_examples/ensemble/plot_partial_dependence.rst:26: WARNING: 'any' reference target not found: MedInc
/home/circleci/project/doc/auto_examples/ensemble/plot_partial_dependence.rst:26: WARNING: 'any' reference target not found: AvgOccup
/home/circleci/project/doc/auto_examples/ensemble/plot_partial_dependence.rst:26: WARNING: 'any' reference target not found: HouseAge
/home/circleci/project/doc/auto_examples/ensemble/plot_partial_dependence.rst:26: WARNING: 'any' reference target not found: AveRooms
/home/circleci/project/doc/auto_examples/ensemble/plot_voting_decision_regions.rst:21: WARNING: 'any' reference target not found: [2, 1, 2]
/home/circleci/project/doc/auto_examples/ensemble/plot_voting_probas.rst:18: WARNING: 'any' reference target not found: [1, 1, 5]
/home/circleci/project/doc/auto_examples/linear_model/plot_ols.rst:13: WARNING: 'any' reference target not found: diabetes
/home/circleci/project/doc/auto_examples/linear_model/plot_ols_ridge_variance.rst:20: WARNING: 'any' reference target not found: shrinks
/home/circleci/project/doc/auto_examples/plot_johnson_lindenstrauss_bound.rst:25: WARNING: 'any' reference target not found: p
/home/circleci/project/doc/auto_examples/plot_johnson_lindenstrauss_bound.rst:25: WARNING: 'any' reference target not found: p
/home/circleci/project/doc/auto_examples/semi_supervised/plot_label_propagation_digits_active_learning.rst:17: WARNING: 'any' reference target not found: max_iterations
/home/circleci/project/doc/auto_examples/svm/plot_svm_margin.rst:13: WARNING: 'any' reference target not found: C
/home/circleci/project/doc/auto_examples/svm/plot_svm_margin.rst:13: WARNING: 'any' reference target not found: C
/home/circleci/project/doc/auto_examples/svm/plot_svm_margin.rst:19: WARNING: 'any' reference target not found: C
/home/circleci/project/doc/auto_examples/svm/plot_svm_scale_c.rst:28: WARNING: 'any' reference target not found: loss
/home/circleci/project/doc/auto_examples/svm/plot_svm_scale_c.rst:30: WARNING: 'any' reference target not found: penalty
/home/circleci/project/doc/auto_examples/svm/plot_svm_scale_c.rst:37: WARNING: 'any' reference target not found: C
/home/circleci/project/doc/auto_examples/svm/plot_svm_scale_c.rst:42: WARNING: 'any' reference target not found: C
/home/circleci/project/doc/auto_examples/svm/plot_svm_scale_c.rst:42: WARNING: 'any' reference target not found: How do we optimally adjust C to account for the different amount of training samples?
/home/circleci/project/doc/auto_examples/svm/plot_svm_scale_c.rst:47: WARNING: 'any' reference target not found: C
/home/circleci/project/doc/auto_examples/svm/plot_svm_scale_c.rst:47: WARNING: 'any' reference target not found: l1
/home/circleci/project/doc/auto_examples/svm/plot_svm_scale_c.rst:47: WARNING: 'any' reference target not found: l2
/home/circleci/project/doc/auto_examples/svm/plot_svm_scale_c.rst:53: WARNING: 'any' reference target not found: l1
/home/circleci/project/doc/auto_examples/svm/plot_svm_scale_c.rst:53: WARNING: 'any' reference target not found: l1
/home/circleci/project/doc/auto_examples/svm/plot_svm_scale_c.rst:53: WARNING: 'any' reference target not found: C1
/home/circleci/project/doc/auto_examples/svm/plot_svm_scale_c.rst:70: WARNING: 'any' reference target not found: C
/home/circleci/project/doc/auto_examples/svm/plot_svm_scale_c.rst:70: WARNING: 'any' reference target not found: x-axis
/home/circleci/project/doc/auto_examples/svm/plot_svm_scale_c.rst:70: WARNING: 'any' reference target not found: y-axis
/home/circleci/project/doc/auto_examples/svm/plot_svm_scale_c.rst:74: WARNING: 'any' reference target not found: l1
/home/circleci/project/doc/auto_examples/svm/plot_svm_scale_c.rst:74: WARNING: 'any' reference target not found: C
/home/circleci/project/doc/auto_examples/svm/plot_svm_scale_c.rst:74: WARNING: 'any' reference target not found: n
/home/circleci/project/doc/auto_examples/svm/plot_svm_scale_c.rst:78: WARNING: 'any' reference target not found: l2
/home/circleci/project/doc/auto_examples/svm/plot_svm_scale_c.rst:78: WARNING: 'any' reference target not found: C
/home/circleci/project/doc/auto_examples/svm/plot_svm_scale_c.rst:83: WARNING: 'any' reference target not found: l1
/home/circleci/project/doc/auto_examples/svm/plot_svm_scale_c.rst:83: WARNING: 'any' reference target not found: l2
/home/circleci/project/doc/auto_examples/tree/plot_tree_regression.rst:20: WARNING: 'any' reference target not found: max_depth
/home/circleci/project/doc/auto_examples/tree/plot_tree_regression_multioutput.rst:21: WARNING: 'any' reference target not found: max_depth
/home/circleci/project/doc/developers/advanced_installation.rst:265: WARNING: 'any' reference target not found: https://pandas.pydata.org/
/home/circleci/project/doc/developers/contributing.rst:277: WARNING: 'any' reference target not found: ./build_tools/circle/flake8_diff.sh
/home/circleci/project/doc/developers/contributing.rst:277: WARNING: 'any' reference target not found: make flake8-diff
/home/circleci/project/doc/developers/contributing.rst:525: WARNING: 'any' reference target not found: NO_MATHJAX=1
/home/circleci/project/doc/developers/contributing.rst:613: WARNING: 'any' reference target not found: tests
/home/circleci/project/doc/developers/maintainer.rst:46: WARNING: 'any' reference target not found: dist/
/home/circleci/project/doc/developers/maintainer.rst:62: WARNING: 'any' reference target not found: dist/
/home/circleci/project/doc/faq.rst:253: WARNING: 'any' reference target not found: multiprocessing
/home/circleci/project/doc/faq.rst:257: WARNING: 'any' reference target not found: fork
/home/circleci/project/doc/glossary.rst:72: WARNING: 'any' reference target not found: pandas.Series
/home/circleci/project/doc/glossary.rst:959: WARNING: 'any' reference target not found: EstimatorCV
/home/circleci/project/doc/glossary.rst:959: WARNING: 'any' reference target not found: GridSearchCV(Estimator(), ...)
/home/circleci/project/doc/modules/clustering.rst:219: WARNING: 'any' reference target not found: numpy
/home/circleci/project/doc/modules/clustering.rst:219: WARNING: 'any' reference target not found: Accelerate
/home/circleci/project/doc/modules/clustering.rst:219: WARNING: 'any' reference target not found: Accelerate
/home/circleci/project/doc/modules/clustering.rst:516: WARNING: 'any' reference target not found: affinity='precomputed'
/home/circleci/project/doc/modules/computing.rst:558: WARNING: 'any' reference target not found: assume_finite
/home/circleci/project/doc/modules/decomposition.rst:544: WARNING: 'any' reference target not found: continuous latent variable
/home/circleci/project/doc/modules/feature_extraction.rst:510: WARNING: 'any' reference target not found: counts
/home/circleci/project/doc/modules/gaussian_process.rst:44: WARNING: 'any' reference target not found: None
/home/circleci/project/doc/modules/gaussian_process.rst:254: WARNING: 'any' reference target not found: None
/home/circleci/project/doc/modules/generated/sklearn.base.BiclusterMixin.rst:1: WARNING: 'any' reference target not found: i
/home/circleci/project/sklearn/base.py:docstring of sklearn.base.BiclusterMixin.get_submatrix:2: WARNING: 'any' reference target not found: i
/home/circleci/project/sklearn/cluster/hierarchical.py:docstring of sklearn.cluster.AgglomerativeClustering:77: WARNING: 'any' reference target not found: i
/home/circleci/project/sklearn/cluster/hierarchical.py:docstring of sklearn.cluster.AgglomerativeClustering:77: WARNING: 'any' reference target not found: children_[i - n_samples]
/home/circleci/project/sklearn/cluster/hierarchical.py:docstring of sklearn.cluster.AgglomerativeClustering:77: WARNING: 'any' reference target not found: n_samples + i
/home/circleci/project/sklearn/cluster/birch.py:docstring of sklearn.cluster.Birch:31: WARNING: 'any' reference target not found: None
/home/circleci/project/sklearn/cluster/birch.py:docstring of sklearn.cluster.Birch:38: WARNING: 'any' reference target not found: int
/home/circleci/project/sklearn/cluster/birch.py:docstring of sklearn.cluster.Birch:38: WARNING: 'any' reference target not found: n_clusters
/home/circleci/project/sklearn/cluster/hierarchical.py:docstring of sklearn.cluster.FeatureAgglomeration:54: WARNING: 'any' reference target not found: axis=1
/home/circleci/project/sklearn/cluster/hierarchical.py:docstring of sklearn.cluster.FeatureAgglomeration:73: WARNING: 'any' reference target not found: i
/home/circleci/project/sklearn/cluster/hierarchical.py:docstring of sklearn.cluster.FeatureAgglomeration:73: WARNING: 'any' reference target not found: children_[i - n_features]
/home/circleci/project/sklearn/cluster/hierarchical.py:docstring of sklearn.cluster.FeatureAgglomeration:73: WARNING: 'any' reference target not found: n_features + i
/home/circleci/project/sklearn/cluster/hierarchical.py:docstring of sklearn.cluster.FeatureAgglomeration.pooling_func:4: WARNING: 'any' reference target not found: float64
/home/circleci/project/sklearn/cluster/hierarchical.py:docstring of sklearn.cluster.FeatureAgglomeration.pooling_func:11: WARNING: 'any' reference target not found: a
/home/circleci/project/sklearn/cluster/hierarchical.py:docstring of sklearn.cluster.FeatureAgglomeration.pooling_func:24: WARNING: 'any' reference target not found: float64
/home/circleci/project/sklearn/cluster/hierarchical.py:docstring of sklearn.cluster.FeatureAgglomeration.pooling_func:29: WARNING: 'any' reference target not found: doc.ufuncs
/home/circleci/project/sklearn/cluster/hierarchical.py:docstring of sklearn.cluster.FeatureAgglomeration.pooling_func:39: WARNING: 'any' reference target not found: keepdims
/home/circleci/project/sklearn/cluster/hierarchical.py:docstring of sklearn.cluster.FeatureAgglomeration.pooling_func:39: WARNING: 'any' reference target not found: mean
/home/circleci/project/sklearn/cluster/hierarchical.py:docstring of sklearn.cluster.FeatureAgglomeration.pooling_func:39: WARNING: 'any' reference target not found: ndarray
/home/circleci/project/sklearn/cluster/hierarchical.py:docstring of sklearn.cluster.FeatureAgglomeration.pooling_func:39: WARNING: 'any' reference target not found: keepdims
/home/circleci/project/sklearn/cluster/hierarchical.py:docstring of sklearn.cluster.FeatureAgglomeration.pooling_func:48: WARNING: 'any' reference target not found: out=None
/home/circleci/project/sklearn/cluster/hierarchical.py:docstring of sklearn.cluster.FeatureAgglomeration.pooling_func:70: WARNING: 'any' reference target not found: float32
/home/circleci/project/sklearn/cluster/hierarchical.py:docstring of sklearn.cluster.FeatureAgglomeration.pooling_func:76: WARNING: 'any' reference target not found: float16
/home/circleci/project/sklearn/cluster/hierarchical.py:docstring of sklearn.cluster.FeatureAgglomeration.pooling_func:76: WARNING: 'any' reference target not found: float32
/home/circleci/project/sklearn/cluster/hierarchical.py:docstring of sklearn.cluster.FeatureAgglomeration.pooling_func:90: WARNING: 'any' reference target not found: mean
/home/circleci/project/sklearn/cluster/k_means_.py:docstring of sklearn.cluster.KMeans.predict:4: WARNING: 'any' reference target not found: cluster_centers_
/home/circleci/project/sklearn/cluster/k_means_.py:docstring of sklearn.cluster.MiniBatchKMeans.predict:4: WARNING: 'any' reference target not found: cluster_centers_
/home/circleci/project/sklearn/cluster/optics_.py:docstring of sklearn.cluster.OPTICS:25: WARNING: 'any' reference target not found: max_eps
/home/circleci/project/sklearn/cluster/optics_.py:docstring of sklearn.cluster.OPTICS:97: WARNING: 'any' reference target not found: size min_maxima_ratio * len(X)
/home/circleci/project/sklearn/cluster/optics_.py:docstring of sklearn.cluster.OPTICS.extract_dbscan:4: WARNING: 'any' reference target not found: max_eps
/home/circleci/project/sklearn/cluster/optics_.py:docstring of sklearn.cluster.OPTICS.extract_dbscan:4: WARNING: 'any' reference target not found: eps
/home/circleci/project/sklearn/cluster/optics_.py:docstring of sklearn.cluster.OPTICS.extract_dbscan:4: WARNING: 'any' reference target not found: max_eps
/home/circleci/project/sklearn/cluster/optics_.py:docstring of sklearn.cluster.OPTICS.extract_dbscan:4: WARNING: 'any' reference target not found: eps
/home/circleci/project/sklearn/cluster/optics_.py:docstring of sklearn.cluster.OPTICS.extract_dbscan:4: WARNING: 'any' reference target not found: max_eps
/home/circleci/project/sklearn/cluster/optics_.py:docstring of sklearn.cluster.OPTICS.extract_dbscan:13: WARNING: 'any' reference target not found: eps
/home/circleci/project/sklearn/cluster/optics_.py:docstring of sklearn.cluster.OPTICS.extract_dbscan:13: WARNING: 'any' reference target not found: max_eps
/home/circleci/project/sklearn/cluster/optics_.py:docstring of sklearn.cluster.OPTICS.extract_dbscan:13: WARNING: 'any' reference target not found: eps
/home/circleci/project/sklearn/cluster/optics_.py:docstring of sklearn.cluster.OPTICS.extract_dbscan:13: WARNING: 'any' reference target not found: max_eps
/home/circleci/project/sklearn/cluster/optics_.py:docstring of sklearn.cluster.OPTICS.fit:4: WARNING: 'any' reference target not found: max_eps
/home/circleci/project/sklearn/cluster/spectral.py:docstring of sklearn.cluster.SpectralClustering:53: WARNING: 'any' reference target not found: sklearn.metrics.pairwise_kernels
/home/circleci/project/sklearn/cluster/affinity_propagation_.py:docstring of sklearn.cluster.affinity_propagation:49: WARNING: 'any' reference target not found: return_n_iter
/home/circleci/project/sklearn/cluster/bicluster.py:docstring of sklearn.cluster.bicluster.SpectralBiclustering:20: WARNING: 'any' reference target not found: method='log'
/home/circleci/project/sklearn/cluster/bicluster.py:docstring of sklearn.cluster.bicluster.SpectralBiclustering:35: WARNING: 'any' reference target not found: scipy.sparse.linalg.svds
/home/circleci/project/sklearn/cluster/bicluster.py:docstring of sklearn.cluster.bicluster.SpectralBiclustering:43: WARNING: 'any' reference target not found: ncv
/home/circleci/project/sklearn/cluster/bicluster.py:docstring of sklearn.cluster.bicluster.SpectralBiclustering:43: WARNING: 'any' reference target not found: svd_method=arpack
/home/circleci/project/sklearn/cluster/bicluster.py:docstring of sklearn.cluster.bicluster.SpectralBiclustering:43: WARNING: 'any' reference target not found: n_oversamples
/home/circleci/project/sklearn/cluster/bicluster.py:docstring of sklearn.cluster.bicluster.SpectralBiclustering:43: WARNING: 'any' reference target not found: svd_method
/home/circleci/project/sklearn/cluster/bicluster.py:docstring of sklearn.cluster.bicluster.SpectralBiclustering:83: WARNING: 'any' reference target not found: rows[i, r]
/home/circleci/project/sklearn/cluster/bicluster.py:docstring of sklearn.cluster.bicluster.SpectralBiclustering:83: WARNING: 'any' reference target not found: i
/home/circleci/project/sklearn/cluster/bicluster.py:docstring of sklearn.cluster.bicluster.SpectralBiclustering:83: WARNING: 'any' reference target not found: r
/home/circleci/project/sklearn/cluster/bicluster.py:docstring of sklearn.cluster.bicluster.SpectralBiclustering:87: WARNING: 'any' reference target not found: rows
/home/circleci/project/doc/modules/generated/sklearn.cluster.bicluster.SpectralBiclustering.rst:1: WARNING: 'any' reference target not found: i
/home/circleci/project/sklearn/cluster/bicluster.py:docstring of sklearn.cluster.bicluster.SpectralBiclustering.get_submatrix:2: WARNING: 'any' reference target not found: i
/home/circleci/project/doc/modules/generated/sklearn.cluster.bicluster.SpectralCoclustering.rst:8: WARNING: 'any' reference target not found: i
/home/circleci/project/doc/modules/generated/sklearn.cluster.bicluster.SpectralCoclustering.rst:8: WARNING: 'any' reference target not found: j
/home/circleci/project/doc/modules/generated/sklearn.cluster.bicluster.SpectralCoclustering.rst:8: WARNING: 'any' reference target not found: X[i, j]
/home/circleci/project/sklearn/cluster/bicluster.py:docstring of sklearn.cluster.bicluster.SpectralCoclustering:30: WARNING: 'any' reference target not found: ncv
/home/circleci/project/sklearn/cluster/bicluster.py:docstring of sklearn.cluster.bicluster.SpectralCoclustering:30: WARNING: 'any' reference target not found: svd_method=arpack
/home/circleci/project/sklearn/cluster/bicluster.py:docstring of sklearn.cluster.bicluster.SpectralCoclustering:30: WARNING: 'any' reference target not found: n_oversamples
/home/circleci/project/sklearn/cluster/bicluster.py:docstring of sklearn.cluster.bicluster.SpectralCoclustering:30: WARNING: 'any' reference target not found: svd_method
/home/circleci/project/sklearn/cluster/bicluster.py:docstring of sklearn.cluster.bicluster.SpectralCoclustering:70: WARNING: 'any' reference target not found: rows[i, r]
/home/circleci/project/sklearn/cluster/bicluster.py:docstring of sklearn.cluster.bicluster.SpectralCoclustering:70: WARNING: 'any' reference target not found: i
/home/circleci/project/sklearn/cluster/bicluster.py:docstring of sklearn.cluster.bicluster.SpectralCoclustering:70: WARNING: 'any' reference target not found: r
/home/circleci/project/sklearn/cluster/bicluster.py:docstring of sklearn.cluster.bicluster.SpectralCoclustering:74: WARNING: 'any' reference target not found: rows
/home/circleci/project/doc/modules/generated/sklearn.cluster.bicluster.SpectralCoclustering.rst:1: WARNING: 'any' reference target not found: i
/home/circleci/project/sklearn/cluster/bicluster.py:docstring of sklearn.cluster.bicluster.SpectralCoclustering.get_submatrix:2: WARNING: 'any' reference target not found: i
/home/circleci/project/sklearn/cluster/k_means_.py:docstring of sklearn.cluster.k_means:107: WARNING: 'any' reference target not found: return_n_iter
/home/circleci/project/sklearn/cluster/hierarchical.py:docstring of sklearn.cluster.ward_tree:39: WARNING: 'any' reference target not found: i
/home/circleci/project/sklearn/cluster/hierarchical.py:docstring of sklearn.cluster.ward_tree:39: WARNING: 'any' reference target not found: children_[i - n_samples]
/home/circleci/project/sklearn/cluster/hierarchical.py:docstring of sklearn.cluster.ward_tree:39: WARNING: 'any' reference target not found: n_samples + i
/home/circleci/project/sklearn/cluster/hierarchical.py:docstring of sklearn.cluster.ward_tree:57: WARNING: 'any' reference target not found: distances[i]
/home/circleci/project/sklearn/cluster/hierarchical.py:docstring of sklearn.cluster.ward_tree:57: WARNING: 'any' reference target not found: children[i, 1]
/home/circleci/project/sklearn/cluster/hierarchical.py:docstring of sklearn.cluster.ward_tree:57: WARNING: 'any' reference target not found: children[i, 2]
/home/circleci/project/sklearn/cluster/hierarchical.py:docstring of sklearn.cluster.ward_tree:57: WARNING: 'any' reference target not found: distances[i]
/home/circleci/project/sklearn/compose/_column_transformer.py:docstring of sklearn.compose.ColumnTransformer:77: WARNING: 'any' reference target not found: fitted_transformer
/home/circleci/project/sklearn/compose/_column_transformer.py:docstring of sklearn.compose.ColumnTransformer:92: WARNING: 'any' reference target not found: sparse_threshold
/home/circleci/project/sklearn/compose/_column_transformer.py:docstring of sklearn.compose.ColumnTransformer:107: WARNING: 'any' reference target not found: passthrough
/home/circleci/project/sklearn/compose/_column_transformer.py:docstring of sklearn.compose.ColumnTransformer:107: WARNING: 'any' reference target not found: passthrough
/home/circleci/project/sklearn/covariance/elliptic_envelope.py:docstring of sklearn.covariance.EllipticEnvelope:21: WARNING: 'any' reference target not found: [n_sample + n_features + 1] / 2
/home/circleci/project/sklearn/covariance/elliptic_envelope.py:docstring of sklearn.covariance.EllipticEnvelope:30: WARNING: 'any' reference target not found: np.random
/home/circleci/project/doc/modules/generated/sklearn.covariance.EmpiricalCovariance.rst:1: WARNING: 'any' reference target not found: self.covariance_
/home/circleci/project/sklearn/covariance/empirical_covariance_.py:docstring of sklearn.covariance.EmpiricalCovariance.score:2: WARNING: 'any' reference target not found: self.covariance_
/home/circleci/project/sklearn/covariance/empirical_covariance_.py:docstring of sklearn.covariance.EmpiricalCovariance.score:20: WARNING: 'any' reference target not found: self.covariance_
/home/circleci/project/doc/modules/generated/sklearn.covariance.GraphLasso.rst:1: WARNING: 'any' reference target not found: self.covariance_
/home/circleci/project/sklearn/covariance/graph_lasso_.py:docstring of sklearn.covariance.GraphLasso.score:2: WARNING: 'any' reference target not found: self.covariance_
/home/circleci/project/sklearn/covariance/graph_lasso_.py:docstring of sklearn.covariance.GraphLasso.score:20: WARNING: 'any' reference target not found: self.covariance_
/home/circleci/project/doc/modules/generated/sklearn.covariance.GraphLassoCV.rst:1: WARNING: 'any' reference target not found: self.covariance_
/home/circleci/project/sklearn/covariance/graph_lasso_.py:docstring of sklearn.covariance.GraphLassoCV.score:2: WARNING: 'any' reference target not found: self.covariance_
/home/circleci/project/sklearn/covariance/graph_lasso_.py:docstring of sklearn.covariance.GraphLassoCV.score:20: WARNING: 'any' reference target not found: self.covariance_
/home/circleci/project/doc/modules/generated/sklearn.covariance.GraphicalLasso.rst:1: WARNING: 'any' reference target not found: self.covariance_
/home/circleci/project/sklearn/covariance/graph_lasso_.py:docstring of sklearn.covariance.GraphicalLasso.score:2: WARNING: 'any' reference target not found: self.covariance_
/home/circleci/project/sklearn/covariance/graph_lasso_.py:docstring of sklearn.covariance.GraphicalLasso.score:20: WARNING: 'any' reference target not found: self.covariance_
/home/circleci/project/doc/modules/generated/sklearn.covariance.GraphicalLassoCV.rst:1: WARNING: 'any' reference target not found: self.covariance_
/home/circleci/project/sklearn/covariance/graph_lasso_.py:docstring of sklearn.covariance.GraphicalLassoCV.score:2: WARNING: 'any' reference target not found: self.covariance_
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font-size: 1em;
font-weight: inherit;
padding: 0;
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Was there the idea to do this from the python side instead of with css?
(in any case, otherwise some more comments here to explain it would be welcome)

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This PR was updated with a python solution. It forces any roles that resolve to term to have the same html structure as a normal term role.

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Thanks @thomasjpfan

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Cool ! For the record, we now have 992 new warnings when building the doc.

@TomDLT yes, we had a try to fix all those instances, but that can be a (or more) separate PRs. It touches tons of lines, but it's worth fixing them.

@adrinjalali adrinjalali merged commit eeaaf94 into scikit-learn:master Mar 3, 2019
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jnothman commented Mar 4, 2019 via email

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We had a discussion about this on Friday, but should probably have recorded that better on github first.

The idea was that (long term) we would use double backticks when we actually know it is code and not a link to the glossary or to a class method.

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Another concern I heard was that removing the warnings would make it hard to catch misspelled references. I am 60/40 in favor of having no warnings and would be okay with some misspelled references that turn into code.

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jnothman commented Mar 7, 2019 via email

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Let's warn but set them to ignore by default.

This can be done with an environment variable, SPHIINX_WARN_BAD_REFERENCES. When this is set to true, the warnings will appear.

@adrinjalali @jorisvandenbossche What do you think?

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I am now 80/20 for ignoring the warnings by default, with a SPHIINX_WARN_BAD_REFERENCES to control when they appear. While looking over a few PRs, I can see how saying "please use double backticks" can add a considerable amount of noise.

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jnothman commented Mar 17, 2019 via email

xhluca pushed a commit to xhluca/scikit-learn that referenced this pull request Apr 28, 2019
* DOC Adds term to column_transformer

* DOC Adjusts sphinx resolution

* DEV Adds comment

* ENH Uses python instead of css
xhluca pushed a commit to xhluca/scikit-learn that referenced this pull request Apr 28, 2019
xhluca pushed a commit to xhluca/scikit-learn that referenced this pull request Apr 28, 2019
koenvandevelde pushed a commit to koenvandevelde/scikit-learn that referenced this pull request Jul 12, 2019
* DOC Adds term to column_transformer

* DOC Adjusts sphinx resolution

* DEV Adds comment

* ENH Uses python instead of css
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6 participants