Skip to content

tifffile deprecation warning on test_tifffile.py #6572

@rosdyana

Description

@rosdyana

Description

Way to reproduce

run pytest on skimage/io/tests/test_tifffile.py

Will show deprecation warning issues

skimage/io/tests/test_tifffile.py ...................................    [100%]

=============================== warnings summary ===============================
skimage/io/tests/test_tifffile.py::TestSave::test_imsave_roundtrip[False-float32-shape1]
skimage/io/tests/test_tifffile.py::TestSave::test_imsave_roundtrip[True-float32-shape1]
  /scikit-image/.venv/lib/python3.10/site-packages/tifffile/tifffile.py:1155: DeprecationWarning: <tifffile.TiffWriter.write> data with shape (10, 10, 3) and dtype 'float32' are stored as RGB with contiguous samples. Future versions will store such data as MINISBLACK in separate pages by default, unless the 'photometric' parameter is specified.
    result = tif.write(

skimage/io/tests/test_tifffile.py::TestSave::test_imsave_roundtrip[False-float32-shape2]
skimage/io/tests/test_tifffile.py::TestSave::test_imsave_roundtrip[True-float32-shape2]
  /scikit-image/.venv/lib/python3.10/site-packages/tifffile/tifffile.py:1155: DeprecationWarning: <tifffile.TiffWriter.write> data with shape (10, 10, 4) and dtype 'float32' are stored as RGB with contiguous samples. Future versions will store such data as MINISBLACK in separate pages by default, unless the 'photometric' parameter is specified.
    result = tif.write(

skimage/io/tests/test_tifffile.py::TestSave::test_imsave_roundtrip[False-int16-shape1]
skimage/io/tests/test_tifffile.py::TestSave::test_imsave_roundtrip[True-int16-shape1]
  /scikit-image/.venv/lib/python3.10/site-packages/tifffile/tifffile.py:1155: DeprecationWarning: <tifffile.TiffWriter.write> data with shape (10, 10, 3) and dtype 'int16' are stored as RGB with contiguous samples. Future versions will store such data as MINISBLACK in separate pages by default, unless the 'photometric' parameter is specified.
    result = tif.write(

skimage/io/tests/test_tifffile.py::TestSave::test_imsave_roundtrip[False-int16-shape2]
skimage/io/tests/test_tifffile.py::TestSave::test_imsave_roundtrip[True-int16-shape2]
  /scikit-image/.venv/lib/python3.10/site-packages/tifffile/tifffile.py:1155: DeprecationWarning: <tifffile.TiffWriter.write> data with shape (10, 10, 4) and dtype 'int16' are stored as RGB with contiguous samples. Future versions will store such data as MINISBLACK in separate pages by default, unless the 'photometric' parameter is specified.
    result = tif.write(

skimage/io/tests/test_tifffile.py::TestSave::test_imsave_roundtrip[False-float64-shape1]
skimage/io/tests/test_tifffile.py::TestSave::test_imsave_roundtrip[True-float64-shape1]
  /scikit-image/.venv/lib/python3.10/site-packages/tifffile/tifffile.py:1155: DeprecationWarning: <tifffile.TiffWriter.write> data with shape (10, 10, 3) and dtype 'float64' are stored as RGB with contiguous samples. Future versions will store such data as MINISBLACK in separate pages by default, unless the 'photometric' parameter is specified.
    result = tif.write(

skimage/io/tests/test_tifffile.py::TestSave::test_imsave_roundtrip[False-float64-shape2]
skimage/io/tests/test_tifffile.py::TestSave::test_imsave_roundtrip[True-float64-shape2]
  /scikit-image/.venv/lib/python3.10/site-packages/tifffile/tifffile.py:1155: DeprecationWarning: <tifffile.TiffWriter.write> data with shape (10, 10, 4) and dtype 'float64' are stored as RGB with contiguous samples. Future versions will store such data as MINISBLACK in separate pages by default, unless the 'photometric' parameter is specified.
    result = tif.write(

-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html

Metadata

Metadata

Assignees

No one assigned

    Labels

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions