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Bug fix: handling of CRLF line terminators in sam_parse_worker()#1149

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daviesrob merged 4 commits intosamtools:developfrom
anderskaplan:crlf-bugfix
Oct 7, 2020
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Bug fix: handling of CRLF line terminators in sam_parse_worker()#1149
daviesrob merged 4 commits intosamtools:developfrom
anderskaplan:crlf-bugfix

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@anderskaplan
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Fixes issue #1148

Also adds a few test cases for kstring which were written while troubleshooting.

@anderskaplan anderskaplan changed the title Bug fix for #1148 Bug fix: handling of CRLF line terminators in sam_parse_worker() Sep 29, 2020
@whitwham
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Looks good, though I will have to go through the tests more carefully.

@whitwham
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whitwham commented Oct 7, 2020

Added a test for a CRLF sam file.

@daviesrob daviesrob merged commit 2264113 into samtools:develop Oct 7, 2020
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Thanks for the fix.

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3 participants