Add FQZComp Codec (Update CRAM Codecs to CRAM 3.1)#1704
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yash-puligundla wants to merge 84 commits intosamtools:masterfrom
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Add FQZComp Codec (Update CRAM Codecs to CRAM 3.1)#1704yash-puligundla wants to merge 84 commits intosamtools:masterfrom
yash-puligundla wants to merge 84 commits intosamtools:masterfrom
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…dded in the streams).
…ift methods for RANS Nx16 Order 0 and Order 1, RANS Nx16 Order 0 and Order 1 with format flags = 1 works as expected when N=4
added 23 commits
December 20, 2023 12:02
… stripe, nosize, cat flags
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Closing in favor of #1714. |
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NOTE: This PR is in draft as it is dependent on #1618 ,#1644 and #1663
Description:
This PR is part of an effort to upgrade CRAM to v3.1. It adds the FQZcomp Decoder implementation.
List of Changes:
Add FQZcomp Decoder
Add FQZcompInteropTest to test the decoder using the test files from htscodecs. These interop tests use the files from samtools installation (samtools-1.14/htslib-1.14/htscodes/tests/fqzcomp)