Add Name Tokenization Codec (Update CRAM Codecs to CRAM 3.1) #1663
Closed
yash-puligundla wants to merge 83 commits intosamtools:masterfrom
Closed
Add Name Tokenization Codec (Update CRAM Codecs to CRAM 3.1) #1663yash-puligundla wants to merge 83 commits intosamtools:masterfrom
yash-puligundla wants to merge 83 commits intosamtools:masterfrom
Conversation
…dded in the streams).
…ift methods for RANS Nx16 Order 0 and Order 1, RANS Nx16 Order 0 and Order 1 with format flags = 1 works as expected when N=4
added 23 commits
December 18, 2023 17:05
… stripe, nosize, cat flags
7d2d0c5 to
67ad384
Compare
Collaborator
|
Closing in favor of #1714. |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
3 participants
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
NOTE: This PR is in draft as it is dependent on RANS NX16 PR and Range Codec PR
Description
This PR is part of an effort to upgrade CRAM to v3.1. It adds the Name Tokenization Decoder implementation.
List of Changes:
Add Name Tokenization Decoder
Add NameTokenizationInteropTest to test the Name Tokenization Decoder using the test files from htscodecs. These interop tests use the files from samtools installation (samtools-1.14/htslib-1.14/htscodes/tests/names)