Modularization of sagelib: Distributions sagemath-{brial,combinat,eclib,flint,gap,giac,glpk,graphs,groups,homfly,lcalc,libbraiding,libecm,linbox,modules,mpmath,ntl,pari,plot,polyhedra,schemes,singular,standard-no-symbolics,symbolics} by mkoeppe · Pull Request #35095 · sagemath/sage

mkoeppe · 2023-02-12T18:37:10Z

📚 Description

Fixes Modularization of sagelib: Break out a separate package sagemath-polyhedra #32432
Fixes Modularization of sagelib: Break out a separate package sagemath-standard-no-symbolics #32601
Fixes sage.combinat.root_system.coxeter_type: Replace module-level import of SR #33674
Fixes sage.categories.classical_crystals: Remove use of sage.symbolic #33673
Fixes Remove module-level imports from sage.symbolic etc. (outside of sage.symbolic, sage.calculus etc.) #32718
Fixes Modularization of sagelib: Break out separate package sagemath-combinat #33660
Fixes Modularization of sagelib: Break out separate package sagemath-linbox #31444
Fixes Modularization of sagelib: Distribution sagemath-plot #32702
Fixes Modularization of sagelib: Break out separate package sagemath-symbolics #31695
Fixes Distributions sagemath-{flint-arb,homfly,giac,gap}, add "sage_setup: distribution" to Cython modules #30666
Fixes Modularization of sagelib: Break out a separate package sagemath-ntl #29912

📝 Checklist

I have made sure that the title is self-explanatory and the description concisely explains the PR.
I have linked an issue or discussion.
I have created tests covering the changes.
I have updated the documentation accordingly.

⌛ Dependencies

This is part of:

Meta-ticket: Modularize sagelib into separate distributions (pip-installable packages) sagemath-... for Sage 10.x #29705

codecov-commenter · 2023-02-14T01:28:11Z

Codecov Report

Patch coverage: 63.80% and project coverage change: -1.22 ⚠️

Comparison is base (c00e6c2) 88.62% compared to head (ef82aaa) 87.40%.

Additional details and impacted files

@@             Coverage Diff             @@
##           develop   #35095      +/-   ##
===========================================
- Coverage    88.62%   87.40%   -1.22%     
===========================================
  Files         2148     2180      +32     
  Lines       398855   399144     +289     
===========================================
- Hits        353480   348878    -4602     
- Misses       45375    50266    +4891

Impacted Files	Coverage Δ
src/sage/all__sagemath_categories.py	`0.00% <0.00%> (ø)`
src/sage/all__sagemath_polyhedra.py	`0.00% <0.00%> (ø)`
src/sage/arith/all.py	`100.00% <ø> (ø)`
src/sage/arith/misc.py	`90.49% <ø> (-0.50%)`	⬇️
src/sage/calculus/test_sympy.py	`0.00% <ø> (ø)`
src/sage/categories/additive_magmas.py	`97.77% <ø> (ø)`
src/sage/categories/additive_semigroups.py	`100.00% <ø> (ø)`
src/sage/categories/affine_weyl_groups.py	`100.00% <ø> (ø)`
src/sage/categories/algebra_functor.py	`80.00% <ø> (-20.00%)`	⬇️
src/sage/categories/algebras.py	`100.00% <ø> (ø)`
... and 232 more

... and 283 files with indirect coverage changes

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kwankyu · 2023-02-22T10:42:53Z

I ran

./bootstrap && ./sage -sh -c '(cd pkgs/sagemath-polyhedra && SAGE_NUM_THREADS=16 tox -v -v -v)'

after full rebuild on macOS monterey, and got

            [37/54] gcc -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -I./sage/cpython -I/private/var/folders/td/fw1q9ljs311ggyph77rs53_40000gn/T/pip-build-env-_on11jf5/overlay/lib/python3.11/site-packages/gmpy2 -I./sage/rings -I/private/var/folders/td/fw1q9ljs311ggyph77rs53_40000gn/T/pip-build-env-_on11jf5/overlay/lib/python3.11/site-packages -I/usr/local/opt/python@3.11/Frameworks/Python.framework/Versions/3.11/include/python3.11 -Ibuild/cythonized -I/Users/kwankyu/GitHub/sage-dev/pkgs/sagemath-polyhedra/.tox/.pkg/include -I/usr/local/opt/python@3.11/Frameworks/Python.framework/Versions/3.11/include/python3.11 -c build/cythonized/sage/structure/coerce.c -o build/temp.macosx-12-x86_64-cpython-311/build/cythonized/sage/structure/coerce.o -fno-strict-aliasing -DCYTHON_CLINE_IN_TRACEBACK=1
            build/cythonized/sage/structure/coerce.c:779:10: fatal error: 'gmp.h' file not found
            #include "gmp.h"
                     ^~~~~~~
            1 error generated.

mkoeppe · 2023-02-22T20:40:01Z

I've updated the instructions for testing.

kwankyu · 2023-02-23T04:55:53Z

sagemath-polyhedra fails to build for me. It says gmp.h is missing.

mkoeppe · 2023-02-23T04:57:05Z

Is this on macOS with homebrew? DId you run .homebrew-build-env?

kwankyu · 2023-02-23T05:06:13Z

Yes. My bash profile does source /Users/kwankyu/GitHub/sage-dev/.homebrew-build-env.

I manually pasted the line and tried again. But I got the same.

kwankyu · 2023-02-23T05:07:45Z

I am trying again after deleting pkgs/sagemath-polyhedra/.tox directory.

kwankyu · 2023-02-23T05:13:52Z

I got the same failure. Part of the log

.pkg: 89422 W install_requires> python -I -m pip install 'cysignals>=1.10.2' 'cython<1.0,>=0.29.21' 'gmpy2>=2.1.0' memory_allocator 'pkgconfig>=1.5.1' 'sage-setup~=10.0b1' 'sagemath-categories~=10.0b1' 'sagemath-environment~=10.0b1' 'setuptools>=49.6.0' 'wheel>=0.36.2' [tox/tox_env/api.py:428]
Collecting cysignals>=1.10.2
  Using cached cysignals-1.11.2-cp311-cp311-macosx_12_0_x86_64.whl
Collecting cython<1.0,>=0.29.21
  Using cached Cython-0.29.33-py2.py3-none-any.whl (987 kB)
Collecting gmpy2>=2.1.0
  Using cached gmpy2-2.1.5-cp311-cp311-macosx_10_9_x86_64.whl (806 kB)
Collecting memory_allocator
  Using cached memory_allocator-0.1.3.tar.gz (19 kB)
  Installing build dependencies ... done
  Getting requirements to build wheel ... done
  Preparing metadata (pyproject.toml) ... done
Collecting pkgconfig>=1.5.1
  Using cached pkgconfig-1.5.5-py3-none-any.whl (6.7 kB)
Collecting sage-setup~=10.0b1
  Using cached sage_setup-10.0b1-py3-none-any.whl
Collecting sagemath-categories~=10.0b1
  Using cached sagemath-categories-10.0b1.tar.gz (504 kB)
  Installing build dependencies ... error
  error: subprocess-exited-with-error
  
  × pip subprocess to install build dependencies did not run successfully.
  │ exit code: 1
  ╰─> [946 lines of output]

mkoeppe · 2023-02-23T05:17:46Z

Have you tried the command make wheels?

kwankyu · 2023-02-23T05:20:38Z

No. Shall I?

mkoeppe · 2023-02-23T05:21:46Z

Yes, that's what I would recommend as the best way of testing

kwankyu · 2023-02-23T05:24:04Z

I ran make wheels. It ended with

[sagemath_objects-10.0.beta1] * Creating venv isolated environment...
[sagemath_objects-10.0.beta1] * Installing packages in isolated environment... (cysignals >=1.10.2, cython >=0.29.21, <1.0, gmpy2 >=2.1.0, sage-setup ~= 10.0b1, sagemath-environment ~= 10.0b1, setuptools >=49.6.0, wheel >=0.36.2)
[sagemath_objects-10.0.beta1] Looking in links: file:///Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.11/var/lib/sage/wheels
[sagemath_objects-10.0.beta1] Processing /Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.11/var/lib/sage/wheels/sagemath_environment-10.0b1-py3-none-any.whl
[sagemath_objects-10.0.beta1] Processing /Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.11/var/lib/sage/wheels/setuptools-65.6.3-py3-none-any.whl
[sagemath_objects-10.0.beta1] Processing /Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.11/var/lib/sage/wheels/Cython-0.29.32-cp311-cp311-macosx_12_0_x86_64.whl
[sagemath_objects-10.0.beta1] Processing /Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.11/var/lib/sage/wheels/gmpy2-2.1.2-cp311-cp311-macosx_12_0_x86_64.whl
[sagemath_objects-10.0.beta1] ERROR: Could not find a version that satisfies the requirement sage-setup~=10.0b1 (from versions: none)
[sagemath_objects-10.0.beta1] ERROR: No matching distribution found for sage-setup~=10.0b1
[sagemath_objects-10.0.beta1] 
[sagemath_objects-10.0.beta1] Traceback (most recent call last):
[sagemath_objects-10.0.beta1]   File "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.11/lib/python3.11/site-packages/build/__main__.py", line 375, in main
[sagemath_objects-10.0.beta1]     built = build_call(
[sagemath_objects-10.0.beta1]             ^^^^^^^^^^^
[sagemath_objects-10.0.beta1]   File "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.11/lib/python3.11/site-packages/build/__main__.py", line 235, in build_package_via_sdist
[sagemath_objects-10.0.beta1]     sdist = _build(isolation, builder, outdir, 'sdist', config_settings, skip_dependency_check)
[sagemath_objects-10.0.beta1]             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[sagemath_objects-10.0.beta1]   File "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.11/lib/python3.11/site-packages/build/__main__.py", line 145, in _build
[sagemath_objects-10.0.beta1]     return _build_in_isolated_env(builder, outdir, distribution, config_settings)
[sagemath_objects-10.0.beta1]            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[sagemath_objects-10.0.beta1]   File "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.11/lib/python3.11/site-packages/build/__main__.py", line 113, in _build_in_isolated_env
[sagemath_objects-10.0.beta1]     env.install(builder.build_system_requires)
[sagemath_objects-10.0.beta1]   File "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.11/lib/python3.11/site-packages/build/env.py", line 214, in install
[sagemath_objects-10.0.beta1]     _subprocess(cmd)
[sagemath_objects-10.0.beta1]   File "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.11/lib/python3.11/site-packages/build/env.py", line 79, in _subprocess
[sagemath_objects-10.0.beta1]     raise e
[sagemath_objects-10.0.beta1]   File "/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.11/lib/python3.11/site-packages/build/env.py", line 76, in _subprocess
[sagemath_objects-10.0.beta1]     subprocess.run(cmd, check=True, stdout=subprocess.PIPE, stderr=subprocess.STDOUT)
[sagemath_objects-10.0.beta1]   File "/usr/local/Cellar/python@3.11/3.11.2_1/Frameworks/Python.framework/Versions/3.11/lib/python3.11/subprocess.py", line 571, in run
[sagemath_objects-10.0.beta1]     raise CalledProcessError(retcode, process.args,
[sagemath_objects-10.0.beta1] subprocess.CalledProcessError: Command '['/private/var/folders/td/fw1q9ljs311ggyph77rs53_40000gn/T/build-env-y415lely/bin/python', '-Im', 'pip', 'install', '--use-pep517', '--no-warn-script-location', '-r', '/var/folders/td/fw1q9ljs311ggyph77rs53_40000gn/T/build-reqs-t6wqxz1a.txt']' returned non-zero exit status 1.
[sagemath_objects-10.0.beta1] 
[sagemath_objects-10.0.beta1] ERROR Command '['/private/var/folders/td/fw1q9ljs311ggyph77rs53_40000gn/T/build-env-y415lely/bin/python', '-Im', 'pip', 'install', '--use-pep517', '--no-warn-script-location', '-r', '/var/folders/td/fw1q9ljs311ggyph77rs53_40000gn/T/build-reqs-t6wqxz1a.txt']' returned non-zero exit status 1.
[sagemath_objects-10.0.beta1] ********************************************************************************
[sagemath_objects-10.0.beta1] Failure building sdist and wheel
[sagemath_objects-10.0.beta1] ********************************************************************************
make[3]: *** [sagemath_objects-SAGE_VENV-no-deps] Error 1
make[2]: *** [/Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.11/var/lib/sage/installed/sagemath_objects-10.0.beta1] Error 2
make[1]: *** [wheels] Error 2

real	0m39.310s
user	0m29.301s
sys	0m8.784s
***************************************************************
Error building Sage.

The following package(s) may have failed to build (not necessarily
during this run of 'make wheels'):

It is safe to delete any log files and build directories, but they
contain information that is helpful for debugging build problems.
WARNING: If you now run 'make' again, the build directory of the
same version of the package will, by default, be deleted. Set the
environment variable SAGE_KEEP_BUILT_SPKGS=yes to prevent this.

make: *** [wheels] Error 1

mkoeppe · 2023-02-23T05:25:52Z

Could you try if ./bootstrap fixes this problem?

kwankyu · 2023-02-23T05:29:14Z

I ran ./bootstrap && make wheels. I got the same error.

mkoeppe · 2023-02-23T05:30:21Z

Could you check the contents of venv/var/lib/sage/wheels/sage*.whl please?

kwankyu · 2023-02-23T05:32:16Z

$ ls venv/var/lib/sage/wheels/sage*.whl
venv/var/lib/sage/wheels/sage_sws2rst-10.0b1-py3-none-any.whl
venv/var/lib/sage/wheels/sagemath_environment-10.0b1-py3-none-any.whl
venv/var/lib/sage/wheels/sagenb_export-3.3-py3-none-any.whl
venv/var/lib/sage/wheels/sagetex-3.6.1-py3-none-any.whl

mkoeppe · 2023-02-23T05:37:03Z

The sage_setup wheel is missing, which should have been one of the first wheels that make wheels makes.

kwankyu · 2023-02-23T05:39:26Z

Part of the log:

make --no-print-directory SAGE_EDITABLE=no SAGE_WHEELS=yes sage_sws2rst sage_setup sagemath_environment sagemath_objects sagemath_repl sagemath_categories sagemath_polyhedra sage_conf sagelib sage_docbuild
make[2]: Nothing to be done for `sage_sws2rst'.
make[2]: Nothing to be done for `sage_setup'.
make --no-print-directory python_build-no-deps
sage-logger -p 'sage --pip install -r "/Users/kwankyu/GitHub/sage-dev/build/pkgs/python_build/requirements.txt"' '/Users/kwankyu/GitHub/sage-dev/logs/pkgs/python_build.log'
[python_build] Requirement already satisfied: build in /Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.11/lib/python3.11/site-packages (from -r /Users/kwankyu/GitHub/sage-dev/build/pkgs/python_build/requirements.txt (line 1)) (0.10.0)
[python_build] Requirement already satisfied: packaging>=19.0 in /Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.11/lib/python3.11/site-packages (from build->-r /Users/kwankyu/GitHub/sage-dev/build/pkgs/python_build/requirements.txt (line 1)) (21.3)
[python_build] Requirement already satisfied: pyproject_hooks in /Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.11/lib/python3.11/site-packages (from build->-r /Users/kwankyu/GitHub/sage-dev/build/pkgs/python_build/requirements.txt (line 1)) (1.0.0)
[python_build] Requirement already satisfied: pyparsing!=3.0.5,>=2.0.2 in /Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.11/lib/python3.11/site-packages (from packaging>=19.0->build->-r /Users/kwankyu/GitHub/sage-dev/build/pkgs/python_build/requirements.txt (line 1)) (3.0.9)
make --no-print-directory sagemath_objects-SAGE_VENV-no-deps
[sagemath_objects-10.0.beta1] * Creating venv isolated environment...
[sagemath_objects-10.0.beta1] * Installing packages in isolated environment... (cysignals >=1.10.2, cython >=0.29.21, <1.0, gmpy2 >=2.1.0, sage-setup ~= 10.0b1, sagemath-environment ~= 10.0b1, setuptools >=49.6.0, wheel >=0.36.2)
[sagemath_objects-10.0.beta1] Looking in links: file:///Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.11/var/lib/sage/wheels
[sagemath_objects-10.0.beta1] Processing /Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.11/var/lib/sage/wheels/wheel-0.38.4-py3-none-any.whl
[sagemath_objects-10.0.beta1] Processing /Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.11/var/lib/sage/wheels/sagemath_environment-10.0b1-py3-none-any.whl
[sagemath_objects-10.0.beta1] Processing /Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.11/var/lib/sage/wheels/gmpy2-2.1.2-cp311-cp311-macosx_12_0_x86_64.whl
[sagemath_objects-10.0.beta1] Processing /Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.11/var/lib/sage/wheels/cysignals-1.11.2-cp311-cp311-macosx_12_0_x86_64.whl
[sagemath_objects-10.0.beta1] Processing /Users/kwankyu/GitHub/sage-dev/local/var/lib/sage/venv-python3.11/var/lib/sage/wheels/setuptools-65.6.3-py3-none-any.whl
[sagemath_objects-10.0.beta1] ERROR: Could not find a version that satisfies the requirement sage-setup~=10.0b1 (from versions: none)
[sagemath_objects-10.0.beta1] ERROR: No matching distribution found for sage-setup~=10.0b1
[sagemath_objects-10.0.beta1]

kwankyu · 2023-02-23T05:41:15Z

It says Nothing to be done for sage_setup!

mkoeppe · 2023-02-23T05:44:07Z

Try with this change please

kwankyu · 2023-02-23T05:53:17Z

Yes. make wheel built sage_setup etc.

What changed? $(SAGE_VENV) is different from venv? venv is a symbolic link to local/var/lib/sage/venv-python3.11.

mkoeppe · 2023-02-23T05:54:31Z

When this Makefile is run, the current directory is build/make, and the venv points nowhere.

kwankyu · 2023-02-23T05:55:43Z

Ah. Then that was a bug. I wonder why that was not found before...

mkoeppe · 2023-02-23T05:56:09Z

I broke this in #35104, which is in "needs review". Fixed now also there.

kwankyu · 2023-02-23T05:58:52Z

Okay.

It seems all is going well. It is now building sagemath_polyhedra wheel. Thanks.

kwankyu · 2023-02-23T07:07:06Z

After successful make wheels,

$ ls venv/var/lib/sage/wheels/sage*.whl     
venv/var/lib/sage/wheels/sage_conf-10.0b1-py3-none-any.whl
venv/var/lib/sage/wheels/sage_docbuild-10.0b1-py3-none-any.whl
venv/var/lib/sage/wheels/sage_setup-10.0b1-py3-none-any.whl
venv/var/lib/sage/wheels/sage_sws2rst-10.0b1-py3-none-any.whl
venv/var/lib/sage/wheels/sagemath_categories-10.0b1-cp311-cp311-macosx_12_0_x86_64.whl
venv/var/lib/sage/wheels/sagemath_environment-10.0b1-py3-none-any.whl
venv/var/lib/sage/wheels/sagemath_objects-10.0b1-cp311-cp311-macosx_12_0_x86_64.whl
venv/var/lib/sage/wheels/sagemath_polyhedra-9.6rc3-cp311-cp311-macosx_12_0_x86_64.whl
venv/var/lib/sage/wheels/sagemath_repl-10.0b1-py3-none-any.whl
venv/var/lib/sage/wheels/sagemath_standard-10.0b1-cp311-cp311-macosx_12_0_x86_64.whl
venv/var/lib/sage/wheels/sagenb_export-3.3-py3-none-any.whl
venv/var/lib/sage/wheels/sagetex-3.6.1-py3-none-any.whl

I did (because I had to) rm -r pkgs/sagemath-polyhedra/.tox, and I ran again ./bootstrap && ./sage -sh -c '(cd pkgs/sagemath-polyhedra && SAGE_NUM_THREADS=16 tox -v -v -v)'.

Unfortunately, I got

.pkg: 76432 W install_requires> python -I -m pip install 'cysignals>=1.10.2' 'cython<1.0,>=0.29.21' 'gmpy2>=2.1.0' memory_allocator 'pkgconfig>=1.5.1' 'sage-setup~=10.0b1' 'sagemath-categories~=10.0b1' 'sagemath-environment~=10.0b1' 'setuptools>=49.6.0' 'wheel>=0.36.2' [tox/tox_env/api.py:428]
Collecting cysignals>=1.10.2
  Using cached cysignals-1.11.2-cp311-cp311-macosx_12_0_x86_64.whl
Collecting cython<1.0,>=0.29.21
  Using cached Cython-0.29.33-py2.py3-none-any.whl (987 kB)
Collecting gmpy2>=2.1.0
  Using cached gmpy2-2.1.5-cp311-cp311-macosx_10_9_x86_64.whl (806 kB)
Collecting memory_allocator
  Using cached memory_allocator-0.1.3.tar.gz (19 kB)
  Installing build dependencies ... done
  Getting requirements to build wheel ... done
  Preparing metadata (pyproject.toml) ... done
Collecting pkgconfig>=1.5.1
  Using cached pkgconfig-1.5.5-py3-none-any.whl (6.7 kB)
Collecting sage-setup~=10.0b1
  Using cached sage_setup-10.0b1-py3-none-any.whl
Collecting sagemath-categories~=10.0b1
  Using cached sagemath-categories-10.0b1.tar.gz (504 kB)
  Installing build dependencies ... error
  error: subprocess-exited-with-error
  
  × pip subprocess to install build dependencies did not run successfully.
  │ exit code: 1
  ╰─> [946 lines of output]

            [ 9/54] gcc -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -I/private/var/folders/td/fw1q9ljs311ggyph77rs53_40000gn/T/pip-build-env-q62uj30s/overlay/lib/python3.11/site-packages -I/usr/local/opt/python@3.11/Frameworks/Python.framework/Versions/3.11/include/python3.11 -Ibuild/cythonized -I/Users/kwankyu/GitHub/sage-dev/pkgs/sagemath-polyhedra/.tox/.pkg/include -I/usr/local/opt/python@3.11/Frameworks/Python.framework/Versions/3.11/include/python3.11 -c build/cythonized/sage/misc/randstate.c -o build/temp.macosx-12-x86_64-cpython-311/build/cythonized/sage/misc/randstate.o -fno-strict-aliasing -DCYTHON_CLINE_IN_TRACEBACK=1
            build/cythonized/sage/misc/randstate.c:773:10: fatal error: 'gmp.h' file not found
            #include "gmp.h"
                     ^~~~~~~
            1 error generated.

mkoeppe · 2023-02-23T07:11:33Z

Try again with this change please

mkoeppe · 2023-02-23T07:14:32Z

Also, could you check which version of tox you use?

kwankyu · 2023-02-23T07:20:01Z

(sage-sh) kwankyu@Hera:sage-dev$ tox --version
4.4.4 from /usr/local/Cellar/tox/4.4.4/libexec/lib/python3.11/site-packages/tox/__init__.py

mkoeppe · 2023-02-23T07:22:32Z

That version should be fine (early 4.x versions had serious defects.)

This reverts commit c0d2ec4.

This reverts commit d4196d7.

…s from pyproject.toml

…ect] dependencies, [project.optional-dependencies] too

…package names, treat dashes and underscores as equivalent

…ted from src/pyproject.toml

…th#35095

…est-failures

…b__break_out_a_separate_package_sagemath_polyhedra

…lib__break_out_a_separate_package_sagemath_polyhedra

… using C++

…zation_of_sagelib__break_out_a_separate_package_sagemath_polyhedra

orlitzky · 2026-02-06T03:19:32Z

This is available in https://github.com/passagemath/passagemath now, and the PR against sage is hopelessly outdated.

Matthias Koeppe added 29 commits June 22, 2024 17:05

Revert "delete generated version requirements files during cleanup"

0f7cb50

This reverts commit c0d2ec4.

Revert "add generated version requirements files to configure tarball"

8cb7e04

This reverts commit d4196d7.

build/pkgs/*/version_requirements.txt: Deduplicate version constraint…

a41bf7a

…s from pyproject.toml

build/bin/sage-get-system-packages: Extract from pyproject.toml [proj…

2634443

…ect] dependencies, [project.optional-dependencies] too

build/bin/sage-get-system-packages: When scanning pyproject.toml for …

dfcf127

…package names, treat dashes and underscores as equivalent

build/bin/sage-get-system-packages: Sort/uniquify package info extrac…

108c29f

…ted from src/pyproject.toml

Merge branch 'brial_experimental' into 10.4.rc0+updates

2222457

Merge branch '36951' into 10.4.rc0+updates

8fff6f4

pkgs/sagemath-{categories,environment}/README.rst: Update from sagema…

0590be2

…th#35095

sage.categories: Update # needs

d3851cd

sage -fixdoctests --distribution sagemath-categories --update-known-t…

6cb3e71

…est-failures

src/sage/all__sagemath_categories.py: Update from sagemath#35095

046dbcf

src/sage/categories/semigroups.py: Fix # needs

04dd503

Merge remote-tracking branch 'upstream/develop' into 36676

b400413

Merge branch '36676' into 10.4.rc0+updates

8ab839e

src/sage/combinat/permutation.py: Use lazy_import for SJT

9bd9f18

sage -fixdoctests --distribution sagemath-categories --update-known-t…

1d29e4b

…est-failures

Merge branch '10.4.rc0+updates' into t/32432/modularization_of_sageli…

452582d

…b__break_out_a_separate_package_sagemath_polyhedra

src/sage/misc/dev_tools.py: Update doctest output

5d2efe1

Merge remote-tracking branch 'upstream/develop' into brial_experimental

736dfdb

src/sage/categories/triangular_kac_moody_algebras.py: Add # needs

dbdb740

src/sage/tests/cmdline.py: Add # needs

9cd16e3

Merge branch 'brial_experimental' into t/32432/modularization_of_sage…

516d8d4

…lib__break_out_a_separate_package_sagemath_polyhedra

Reverts

5bf2b6f

pkgs/sagemath-standard-no-symbolics/meson.build: Fix up

5b7afcf

src/sage_setup/autogen/meson [not --monolithic]: Build all extensions…

5f9c6ae

… using C++

build/pkgs/sagemath_objects/spkg-install.in: Use sdh_build_wheel

810dea1

src/sage_setup/autogen/meson/__init__.py: arb -> flint

b795861

Merge remote-tracking branch 'upstream/develop' into t/32432/modulari…

1154dbd

…zation_of_sagelib__break_out_a_separate_package_sagemath_polyhedra

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