[Data] - Handle BaseMaskedDtype -> pa type in schema#57176
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Signed-off-by: Goutam V. <goutam@anyscale.com>
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Code Review
This pull request correctly addresses the conversion of pd.Int64Dtype to a pyarrow type. However, the implementation has a side effect that could lead to incorrect type conversion for other pandas masked dtypes like pd.BooleanDtype. I've provided a suggestion to make the conversion logic more robust by using duck typing and prioritizing the pyarrow_dtype attribute, which also avoids importing from a private pandas module. I've also suggested adding a test case to cover this scenario and prevent future regressions.
Signed-off-by: Goutam V. <goutam@anyscale.com>
| elif isinstance(dtype, pd.StringDtype): | ||
| # StringDtype is not a BaseMaskedDtype, handle separately | ||
| return pa.string() | ||
| elif isinstance(dtype, BaseMaskedDtype): | ||
| dtype = dtype.numpy_dtype | ||
| return pa.from_numpy_dtype(dtype) |
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Is this not handled by from_numpy_dtype
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No pd.ExtensionDtypes aren't handled by from_numpy_dtype
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In [1]: import pandas as pd
In [2]: x = pd.Float64Dtype()
In [3]: import pyarrow as pa
In [4]: pa.from_numpy_dtype(x)
---------------------------------------------------------------------------
TypeError Traceback (most recent call last)
Cell In[4], line 1
----> 1 pa.from_numpy_dtype(x)
File ~/Documents/ray/.venv/lib/python3.11/site-packages/pyarrow/types.pxi:5963, in pyarrow.lib.from_numpy_dtype()
TypeError: Cannot interpret 'Float64Dtype()' as a data type
In [5]: pa.from_numpy_dtype(x.numpy_dtype)
Out[5]: DataType(double)
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String example:
In [7]: x = pd.StringDtype()
In [8]: pa.from_numpy_dtype(x.numpy_dtype)
---------------------------------------------------------------------------
AttributeError Traceback (most recent call last)
Cell In[8], line 1
----> 1 pa.from_numpy_dtype(x.numpy_dtype)
AttributeError: 'StringDtype' object has no attribute 'numpy_dtype'
<!-- Thank you for your contribution! Please review https://github.com/ray-project/ray/blob/master/CONTRIBUTING.rst before opening a pull request. --> <!-- Please add a reviewer to the assignee section when you create a PR. If you don't have the access to it, we will shortly find a reviewer and assign them to your PR. --> ## Why are these changes needed? If schema has `pd.Int64Dtype()` then `pa.from_numpy_dtype` fails. So in this change we extract the underlying numpy dtype from pandas then let pyarrow take over from there. ## Related issue number <!-- For example: "Closes #1234" --> ## Checks - [x] I've signed off every commit(by using the -s flag, i.e., `git commit -s`) in this PR. - [x] I've run pre-commit jobs to lint the changes in this PR. ([pre-commit setup](https://docs.ray.io/en/latest/ray-contribute/getting-involved.html#lint-and-formatting)) - [ ] I've included any doc changes needed for https://docs.ray.io/en/master/. - [ ] I've added any new APIs to the API Reference. For example, if I added a method in Tune, I've added it in `doc/source/tune/api/` under the corresponding `.rst` file. - [ ] I've made sure the tests are passing. Note that there might be a few flaky tests, see the recent failures at https://flakey-tests.ray.io/ - Testing Strategy - [x] Unit tests - [ ] Release tests - [ ] This PR is not tested :( --------- Signed-off-by: Goutam V. <goutam@anyscale.com> Signed-off-by: Douglas Strodtman <douglas@anyscale.com>
<!-- Thank you for your contribution! Please review https://github.com/ray-project/ray/blob/master/CONTRIBUTING.rst before opening a pull request. --> <!-- Please add a reviewer to the assignee section when you create a PR. If you don't have the access to it, we will shortly find a reviewer and assign them to your PR. --> ## Why are these changes needed? If schema has `pd.Int64Dtype()` then `pa.from_numpy_dtype` fails. So in this change we extract the underlying numpy dtype from pandas then let pyarrow take over from there. ## Related issue number <!-- For example: "Closes ray-project#1234" --> ## Checks - [x] I've signed off every commit(by using the -s flag, i.e., `git commit -s`) in this PR. - [x] I've run pre-commit jobs to lint the changes in this PR. ([pre-commit setup](https://docs.ray.io/en/latest/ray-contribute/getting-involved.html#lint-and-formatting)) - [ ] I've included any doc changes needed for https://docs.ray.io/en/master/. - [ ] I've added any new APIs to the API Reference. For example, if I added a method in Tune, I've added it in `doc/source/tune/api/` under the corresponding `.rst` file. - [ ] I've made sure the tests are passing. Note that there might be a few flaky tests, see the recent failures at https://flakey-tests.ray.io/ - Testing Strategy - [x] Unit tests - [ ] Release tests - [ ] This PR is not tested :( --------- Signed-off-by: Goutam V. <goutam@anyscale.com> Signed-off-by: Seiji Eicher <seiji@anyscale.com>
<!-- Thank you for your contribution! Please review https://github.com/ray-project/ray/blob/master/CONTRIBUTING.rst before opening a pull request. --> <!-- Please add a reviewer to the assignee section when you create a PR. If you don't have the access to it, we will shortly find a reviewer and assign them to your PR. --> ## Why are these changes needed? If schema has `pd.Int64Dtype()` then `pa.from_numpy_dtype` fails. So in this change we extract the underlying numpy dtype from pandas then let pyarrow take over from there. ## Related issue number <!-- For example: "Closes ray-project#1234" --> ## Checks - [x] I've signed off every commit(by using the -s flag, i.e., `git commit -s`) in this PR. - [x] I've run pre-commit jobs to lint the changes in this PR. ([pre-commit setup](https://docs.ray.io/en/latest/ray-contribute/getting-involved.html#lint-and-formatting)) - [ ] I've included any doc changes needed for https://docs.ray.io/en/master/. - [ ] I've added any new APIs to the API Reference. For example, if I added a method in Tune, I've added it in `doc/source/tune/api/` under the corresponding `.rst` file. - [ ] I've made sure the tests are passing. Note that there might be a few flaky tests, see the recent failures at https://flakey-tests.ray.io/ - Testing Strategy - [x] Unit tests - [ ] Release tests - [ ] This PR is not tested :( --------- Signed-off-by: Goutam V. <goutam@anyscale.com>
<!-- Thank you for your contribution! Please review https://github.com/ray-project/ray/blob/master/CONTRIBUTING.rst before opening a pull request. --> <!-- Please add a reviewer to the assignee section when you create a PR. If you don't have the access to it, we will shortly find a reviewer and assign them to your PR. --> ## Why are these changes needed? If schema has `pd.Int64Dtype()` then `pa.from_numpy_dtype` fails. So in this change we extract the underlying numpy dtype from pandas then let pyarrow take over from there. ## Related issue number <!-- For example: "Closes ray-project#1234" --> ## Checks - [x] I've signed off every commit(by using the -s flag, i.e., `git commit -s`) in this PR. - [x] I've run pre-commit jobs to lint the changes in this PR. ([pre-commit setup](https://docs.ray.io/en/latest/ray-contribute/getting-involved.html#lint-and-formatting)) - [ ] I've included any doc changes needed for https://docs.ray.io/en/master/. - [ ] I've added any new APIs to the API Reference. For example, if I added a method in Tune, I've added it in `doc/source/tune/api/` under the corresponding `.rst` file. - [ ] I've made sure the tests are passing. Note that there might be a few flaky tests, see the recent failures at https://flakey-tests.ray.io/ - Testing Strategy - [x] Unit tests - [ ] Release tests - [ ] This PR is not tested :( --------- Signed-off-by: Goutam V. <goutam@anyscale.com>
<!-- Thank you for your contribution! Please review https://github.com/ray-project/ray/blob/master/CONTRIBUTING.rst before opening a pull request. --> <!-- Please add a reviewer to the assignee section when you create a PR. If you don't have the access to it, we will shortly find a reviewer and assign them to your PR. --> ## Why are these changes needed? If schema has `pd.Int64Dtype()` then `pa.from_numpy_dtype` fails. So in this change we extract the underlying numpy dtype from pandas then let pyarrow take over from there. ## Related issue number <!-- For example: "Closes ray-project#1234" --> ## Checks - [x] I've signed off every commit(by using the -s flag, i.e., `git commit -s`) in this PR. - [x] I've run pre-commit jobs to lint the changes in this PR. ([pre-commit setup](https://docs.ray.io/en/latest/ray-contribute/getting-involved.html#lint-and-formatting)) - [ ] I've included any doc changes needed for https://docs.ray.io/en/master/. - [ ] I've added any new APIs to the API Reference. For example, if I added a method in Tune, I've added it in `doc/source/tune/api/` under the corresponding `.rst` file. - [ ] I've made sure the tests are passing. Note that there might be a few flaky tests, see the recent failures at https://flakey-tests.ray.io/ - Testing Strategy - [x] Unit tests - [ ] Release tests - [ ] This PR is not tested :( --------- Signed-off-by: Goutam V. <goutam@anyscale.com>
<!-- Thank you for your contribution! Please review https://github.com/ray-project/ray/blob/master/CONTRIBUTING.rst before opening a pull request. --> <!-- Please add a reviewer to the assignee section when you create a PR. If you don't have the access to it, we will shortly find a reviewer and assign them to your PR. --> ## Why are these changes needed? If schema has `pd.Int64Dtype()` then `pa.from_numpy_dtype` fails. So in this change we extract the underlying numpy dtype from pandas then let pyarrow take over from there. ## Related issue number <!-- For example: "Closes ray-project#1234" --> ## Checks - [x] I've signed off every commit(by using the -s flag, i.e., `git commit -s`) in this PR. - [x] I've run pre-commit jobs to lint the changes in this PR. ([pre-commit setup](https://docs.ray.io/en/latest/ray-contribute/getting-involved.html#lint-and-formatting)) - [ ] I've included any doc changes needed for https://docs.ray.io/en/master/. - [ ] I've added any new APIs to the API Reference. For example, if I added a method in Tune, I've added it in `doc/source/tune/api/` under the corresponding `.rst` file. - [ ] I've made sure the tests are passing. Note that there might be a few flaky tests, see the recent failures at https://flakey-tests.ray.io/ - Testing Strategy - [x] Unit tests - [ ] Release tests - [ ] This PR is not tested :( --------- Signed-off-by: Goutam V. <goutam@anyscale.com>
<!-- Thank you for your contribution! Please review https://github.com/ray-project/ray/blob/master/CONTRIBUTING.rst before opening a pull request. --> <!-- Please add a reviewer to the assignee section when you create a PR. If you don't have the access to it, we will shortly find a reviewer and assign them to your PR. --> ## Why are these changes needed? If schema has `pd.Int64Dtype()` then `pa.from_numpy_dtype` fails. So in this change we extract the underlying numpy dtype from pandas then let pyarrow take over from there. ## Related issue number <!-- For example: "Closes ray-project#1234" --> ## Checks - [x] I've signed off every commit(by using the -s flag, i.e., `git commit -s`) in this PR. - [x] I've run pre-commit jobs to lint the changes in this PR. ([pre-commit setup](https://docs.ray.io/en/latest/ray-contribute/getting-involved.html#lint-and-formatting)) - [ ] I've included any doc changes needed for https://docs.ray.io/en/master/. - [ ] I've added any new APIs to the API Reference. For example, if I added a method in Tune, I've added it in `doc/source/tune/api/` under the corresponding `.rst` file. - [ ] I've made sure the tests are passing. Note that there might be a few flaky tests, see the recent failures at https://flakey-tests.ray.io/ - Testing Strategy - [x] Unit tests - [ ] Release tests - [ ] This PR is not tested :( --------- Signed-off-by: Goutam V. <goutam@anyscale.com>
<!-- Thank you for your contribution! Please review https://github.com/ray-project/ray/blob/master/CONTRIBUTING.rst before opening a pull request. --> <!-- Please add a reviewer to the assignee section when you create a PR. If you don't have the access to it, we will shortly find a reviewer and assign them to your PR. --> ## Why are these changes needed? If schema has `pd.Int64Dtype()` then `pa.from_numpy_dtype` fails. So in this change we extract the underlying numpy dtype from pandas then let pyarrow take over from there. ## Related issue number <!-- For example: "Closes ray-project#1234" --> ## Checks - [x] I've signed off every commit(by using the -s flag, i.e., `git commit -s`) in this PR. - [x] I've run pre-commit jobs to lint the changes in this PR. ([pre-commit setup](https://docs.ray.io/en/latest/ray-contribute/getting-involved.html#lint-and-formatting)) - [ ] I've included any doc changes needed for https://docs.ray.io/en/master/. - [ ] I've added any new APIs to the API Reference. For example, if I added a method in Tune, I've added it in `doc/source/tune/api/` under the corresponding `.rst` file. - [ ] I've made sure the tests are passing. Note that there might be a few flaky tests, see the recent failures at https://flakey-tests.ray.io/ - Testing Strategy - [x] Unit tests - [ ] Release tests - [ ] This PR is not tested :( --------- Signed-off-by: Goutam V. <goutam@anyscale.com> Signed-off-by: Josh Kodi <joshkodi@gmail.com>
<!-- Thank you for your contribution! Please review https://github.com/ray-project/ray/blob/master/CONTRIBUTING.rst before opening a pull request. --> <!-- Please add a reviewer to the assignee section when you create a PR. If you don't have the access to it, we will shortly find a reviewer and assign them to your PR. --> ## Why are these changes needed? If schema has `pd.Int64Dtype()` then `pa.from_numpy_dtype` fails. So in this change we extract the underlying numpy dtype from pandas then let pyarrow take over from there. ## Related issue number <!-- For example: "Closes ray-project#1234" --> ## Checks - [x] I've signed off every commit(by using the -s flag, i.e., `git commit -s`) in this PR. - [x] I've run pre-commit jobs to lint the changes in this PR. ([pre-commit setup](https://docs.ray.io/en/latest/ray-contribute/getting-involved.html#lint-and-formatting)) - [ ] I've included any doc changes needed for https://docs.ray.io/en/master/. - [ ] I've added any new APIs to the API Reference. For example, if I added a method in Tune, I've added it in `doc/source/tune/api/` under the corresponding `.rst` file. - [ ] I've made sure the tests are passing. Note that there might be a few flaky tests, see the recent failures at https://flakey-tests.ray.io/ - Testing Strategy - [x] Unit tests - [ ] Release tests - [ ] This PR is not tested :( --------- Signed-off-by: Goutam V. <goutam@anyscale.com>
<!-- Thank you for your contribution! Please review https://github.com/ray-project/ray/blob/master/CONTRIBUTING.rst before opening a pull request. --> <!-- Please add a reviewer to the assignee section when you create a PR. If you don't have the access to it, we will shortly find a reviewer and assign them to your PR. --> ## Why are these changes needed? If schema has `pd.Int64Dtype()` then `pa.from_numpy_dtype` fails. So in this change we extract the underlying numpy dtype from pandas then let pyarrow take over from there. ## Related issue number <!-- For example: "Closes ray-project#1234" --> ## Checks - [x] I've signed off every commit(by using the -s flag, i.e., `git commit -s`) in this PR. - [x] I've run pre-commit jobs to lint the changes in this PR. ([pre-commit setup](https://docs.ray.io/en/latest/ray-contribute/getting-involved.html#lint-and-formatting)) - [ ] I've included any doc changes needed for https://docs.ray.io/en/master/. - [ ] I've added any new APIs to the API Reference. For example, if I added a method in Tune, I've added it in `doc/source/tune/api/` under the corresponding `.rst` file. - [ ] I've made sure the tests are passing. Note that there might be a few flaky tests, see the recent failures at https://flakey-tests.ray.io/ - Testing Strategy - [x] Unit tests - [ ] Release tests - [ ] This PR is not tested :( --------- Signed-off-by: Goutam V. <goutam@anyscale.com>
<!-- Thank you for your contribution! Please review https://github.com/ray-project/ray/blob/master/CONTRIBUTING.rst before opening a pull request. --> <!-- Please add a reviewer to the assignee section when you create a PR. If you don't have the access to it, we will shortly find a reviewer and assign them to your PR. --> ## Why are these changes needed? If schema has `pd.Int64Dtype()` then `pa.from_numpy_dtype` fails. So in this change we extract the underlying numpy dtype from pandas then let pyarrow take over from there. ## Related issue number <!-- For example: "Closes ray-project#1234" --> ## Checks - [x] I've signed off every commit(by using the -s flag, i.e., `git commit -s`) in this PR. - [x] I've run pre-commit jobs to lint the changes in this PR. ([pre-commit setup](https://docs.ray.io/en/latest/ray-contribute/getting-involved.html#lint-and-formatting)) - [ ] I've included any doc changes needed for https://docs.ray.io/en/master/. - [ ] I've added any new APIs to the API Reference. For example, if I added a method in Tune, I've added it in `doc/source/tune/api/` under the corresponding `.rst` file. - [ ] I've made sure the tests are passing. Note that there might be a few flaky tests, see the recent failures at https://flakey-tests.ray.io/ - Testing Strategy - [x] Unit tests - [ ] Release tests - [ ] This PR is not tested :( --------- Signed-off-by: Goutam V. <goutam@anyscale.com> Signed-off-by: Aydin Abiar <aydin@anyscale.com>
<!-- Thank you for your contribution! Please review https://github.com/ray-project/ray/blob/master/CONTRIBUTING.rst before opening a pull request. --> <!-- Please add a reviewer to the assignee section when you create a PR. If you don't have the access to it, we will shortly find a reviewer and assign them to your PR. --> ## Why are these changes needed? If schema has `pd.Int64Dtype()` then `pa.from_numpy_dtype` fails. So in this change we extract the underlying numpy dtype from pandas then let pyarrow take over from there. ## Related issue number <!-- For example: "Closes ray-project#1234" --> ## Checks - [x] I've signed off every commit(by using the -s flag, i.e., `git commit -s`) in this PR. - [x] I've run pre-commit jobs to lint the changes in this PR. ([pre-commit setup](https://docs.ray.io/en/latest/ray-contribute/getting-involved.html#lint-and-formatting)) - [ ] I've included any doc changes needed for https://docs.ray.io/en/master/. - [ ] I've added any new APIs to the API Reference. For example, if I added a method in Tune, I've added it in `doc/source/tune/api/` under the corresponding `.rst` file. - [ ] I've made sure the tests are passing. Note that there might be a few flaky tests, see the recent failures at https://flakey-tests.ray.io/ - Testing Strategy - [x] Unit tests - [ ] Release tests - [ ] This PR is not tested :( --------- Signed-off-by: Goutam V. <goutam@anyscale.com> Signed-off-by: Future-Outlier <eric901201@gmail.com>
Why are these changes needed?
If schema has
pd.Int64Dtype()thenpa.from_numpy_dtypefails. So in this change we extract the underlying numpy dtype from pandas then let pyarrow take over from there.Related issue number
Checks
git commit -s) in this PR.method in Tune, I've added it in
doc/source/tune/api/under thecorresponding
.rstfile.