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Added unit tests for RowDiff#430

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hmusta merged 9 commits intohm/chain_optimfrom
row_diff_tests
Sep 11, 2022
Merged

Added unit tests for RowDiff#430
hmusta merged 9 commits intohm/chain_optimfrom
row_diff_tests

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@hmusta hmusta commented Sep 8, 2022

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@hmusta hmusta requested a review from karasikov September 8, 2022 15:17
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hmusta commented Sep 8, 2022

Some of the AnnotatedDBG unit tests seem to not be working with RowDiff annotators. @karasikov could you please take a look and see if the conversion is being done correctly in build_anno_graph?

@hmusta hmusta requested a review from karasikov September 11, 2022 22:29
@hmusta hmusta changed the base branch from master to hm/chain_optim September 11, 2022 23:31
@hmusta hmusta merged commit 2093279 into hm/chain_optim Sep 11, 2022
@hmusta hmusta deleted the row_diff_tests branch September 11, 2022 23:35
hmusta added a commit that referenced this pull request Sep 12, 2022
* use sdust to filter out low complexity seeds

* better chaining

* simpler labeled seeding

* prefilter seeds by min_exact_match

* load adj_rc in query --align regime

* add chaining support to protein graphs

* Added unit tests for RowDiff (#430)
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