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ncfrey
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| model_name: UME_medium | ||
| vocab_size: 640 | ||
| model_name: UME_mini | ||
| vocab_size: 889 |
| """Samples a single tokenized input from a batch of tokenized inputs. | ||
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| Meant to be used with tokenized inputs from 3D coordinates latent generator | ||
| dataset (e.g. LatentGeneratorPinderIterableDataset) which containts 4 poses |
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* add peer datasets * fix ruff * add peer datasets, fix get item for all tasks * lg tokenizer * lg tokenizer assets * lint * added test and new wor level model v bpe * rename to include coord tokenization explicity * ruff tests * dataset hg * ruff * nathans comments * forgot to add files * Add 3D Pinder to Ume datamodule (#45) * Ume tokenizers and dataset sampling options (#46) Creates mutually-compatible multi-modal Ume tokenizers Ensures that the vocab size is a multiple of 64 Adds an option to use multiplex sampler in Ume datamodule (in addition to round robin concatenation) Adds stopping conditions to round robin concatenation * add peer datasets * peer callback 1 * add tests * fix ruff reformat * fix per-residue task logic * ruff readd spaces * ruff check * remove unnecessary download arg * ruff checks * uv update --------- Co-authored-by: Taylor Joren <joren.taylor@gene.com> Co-authored-by: Sidney Lisanza <lisanzas@gene.com> Co-authored-by: karinazad <karina.zadorozhny@gmail.com>
ncfrey
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* add peer datasets * fix ruff * add peer datasets, fix get item for all tasks * lg tokenizer * lg tokenizer assets * lint * added test and new wor level model v bpe * rename to include coord tokenization explicity * ruff tests * dataset hg * ruff * nathans comments * forgot to add files * Add 3D Pinder to Ume datamodule (#45) * Ume tokenizers and dataset sampling options (#46) Creates mutually-compatible multi-modal Ume tokenizers Ensures that the vocab size is a multiple of 64 Adds an option to use multiplex sampler in Ume datamodule (in addition to round robin concatenation) Adds stopping conditions to round robin concatenation * add peer datasets * peer callback 1 * add tests * fix ruff reformat * fix per-residue task logic * ruff readd spaces * ruff check * remove unnecessary download arg * ruff checks * uv update --------- Co-authored-by: Taylor Joren <joren.taylor@gene.com> Co-authored-by: Sidney Lisanza <lisanzas@gene.com> Co-authored-by: karinazad <karina.zadorozhny@gmail.com>
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