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Isotonic#391

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percolator merged 118 commits intopercolator:masterfrom
statisticalbiotechnology:isotonic
May 26, 2025
Merged

Isotonic#391
percolator merged 118 commits intopercolator:masterfrom
statisticalbiotechnology:isotonic

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This pull request implements some new ways to implement PEP estimates using two different isotonic regressions: PAVA and Isplines.

percolator and others added 30 commits May 11, 2022 11:32
* Added checks for number of decoy PSMs<=1 (percolator#337)

* Check for decoy size<=1
* Added 3.06 to changelog
* Bumped verson numbers

* Removing multiple warnings of decoyPrefix not being set (despite being set). (percolator#338)

* Removing some sources of repeated warnings about missing decoyPrefixes in protein names
* Corrected typo
percolator#340) (#2)

* #ifdef CRUX macros removed. Percolator no longer produces dedicated output for CRUX.

Co-authored-by: Attila -- Kertesz-Farkas <kfattila@yandex.com>
* Buildscript compability with ubuntu 22.04 and higher

* fixing column header case sensitivity error
@percolator percolator merged commit 170775e into percolator:master May 26, 2025
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