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[update] bump Bakta to 1.5.0#2000

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rpetit3 merged 1 commit into
nf-core:masterfrom
rpetit3:rp3-update-bakta
Sep 2, 2022
Merged

[update] bump Bakta to 1.5.0#2000
rpetit3 merged 1 commit into
nf-core:masterfrom
rpetit3:rp3-update-bakta

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@rpetit3 rpetit3 commented Sep 2, 2022

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Updates bakta to latest version with pseudogene support

PR checklist

Closes #XXX

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the module conventions in the contribution docs
  • If necessary, include test data in your PR.
  • Remove all TODO statements.
  • Emit the versions.yml file.
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  • Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • PROFILE=docker pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware
    • PROFILE=singularity pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware
    • PROFILE=conda pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware

@rpetit3 rpetit3 self-assigned this Sep 2, 2022
@jfy133 jfy133 self-requested a review September 2, 2022 18:48
@rpetit3 rpetit3 merged commit f881eb7 into nf-core:master Sep 2, 2022
@rpetit3 rpetit3 deleted the rp3-update-bakta branch September 2, 2022 21:15
matthdsm pushed a commit to matthdsm/nf-core-modules that referenced this pull request Sep 5, 2022
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2 participants