Add remote file support (snakemake v8+)#57
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jameshadfield merged 1 commit intomainfrom Jul 21, 2025
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Thanks @jameshadfield!
I originally implemented this in <nextstrain/zika#89> and that's where the bulk of the discussion and review happened. That PR wasn't merged and instead it was added to ncov via <nextstrain/ncov#1180>. The code in this commit is copied directly from <https://github.com/nextstrain/ncov/blob/137ffc479a1bfe4e2c6ae1bbcd1b22e3afc5f8dd/workflow/snakemake_rules/remote_files.smk> with some changes to comments in the code as applicable. Closes #56
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I originally implemented this in nextstrain/zika#89 and that's where the bulk of the discussion and review happened. That PR wasn't merged and instead it was added to ncov via nextstrain/ncov#1180. The code in this commit is copied directly from https://github.com/nextstrain/ncov/blob/137ffc479a1bfe4e2c6ae1bbcd1b22e3afc5f8dd/workflow/snakemake_rules/remote_files.smk
Closes #56