Skip to content

feat: add overallScore and overallStatus QC columns to metadata.tsv#283

Merged
ivan-aksamentov merged 1 commit intomasterfrom
feat/add-nextclade-qc-columns
Feb 10, 2022
Merged

feat: add overallScore and overallStatus QC columns to metadata.tsv#283
ivan-aksamentov merged 1 commit intomasterfrom
feat/add-nextclade-qc-columns

Conversation

@ivan-aksamentov
Copy link
Copy Markdown
Member

@ivan-aksamentov ivan-aksamentov commented Feb 10, 2022

Addresses the metadata portion of nextstrain/ncov#861

See the symmetrical PR in ncov: nextstrain/ncov#865

This adds the copying of the following columns from nextclade.tsv to metadata.tsv:

    "qc.overallScore": "QC_overall_score",
    "qc.overallStatus": "QC_overall_status",

Addresses the metadata portion of nextstrain/ncov#861

See the symmetrical PR in ncov: nextstrain/ncov#865

This adds the copying of the following columns from `nextclade.tsv` to `metadata.tsv`:

```
    "qc.overallScore": "QC_overall_score",
    "qc.overallStatus": "QC_overall_status",
```
@ivan-aksamentov ivan-aksamentov force-pushed the feat/add-nextclade-qc-columns branch from 7213511 to fff5006 Compare February 10, 2022 07:20
@ivan-aksamentov
Copy link
Copy Markdown
Member Author

ivan-aksamentov commented Feb 10, 2022

This change does not require full reingest, because the columns are already present in the current nextclade.tsv. Once merged, the next daily ingest will make a full join of 2 files and the columns will appear in the output.

@ivan-aksamentov ivan-aksamentov merged commit 25547dd into master Feb 10, 2022
@ivan-aksamentov ivan-aksamentov deleted the feat/add-nextclade-qc-columns branch February 10, 2022 20:16
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

2 participants