Solve Job arrays exceeding queuesize#6314
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bentsherman merged 8 commits intomasterfrom Jul 28, 2025
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Signed-off-by: jorgee <jorge.ejarque@seqera.io>
Signed-off-by: Ben Sherman <bentshermann@gmail.com>
Signed-off-by: Ben Sherman <bentshermann@gmail.com>
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This reverts commit fcf5b87.
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I went for a simpler solution for this problem #6345 |
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Your PR does not update the forks count correctly. This PR should be restored |
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close #5920
Modifying canSubmit to avoid to avoid exceed executor.queueSize parameter.
Printing warning when array size exceeds the queueSize. This can make the task array 'unsubmitable' (Not sure if we should abort the execution in this situation)
Add unit tests
Tested with this pipeline
With a config with awsbatch executor and different executor.queueSize values:
size 15: Only one job submitted at a time in AWS Batch.
size 5: Prints a warning but run continues without the task array jobs submitted.