Use conda-forge and bioconda channels by default#5423
Merged
bentsherman merged 7 commits intomasterfrom Jan 13, 2026
Merged
Conversation
If `conda.channels` is not specified, set it to `conda-forge`,`bioconda` by default. Quick edit, haven't adjusted tests or anything here, just wanted to raise for discussion. Signed-off-by: Phil Ewels <phil.ewels@seqera.io>
✅ Deploy Preview for nextflow-docs-staging ready!
To edit notification comments on pull requests, go to your Netlify project configuration. |
5a93547 to
27345a6
Compare
b4b321e to
069653d
Compare
Signed-off-by: Phil Ewels <phil.ewels@seqera.io>
Signed-off-by: Phil Ewels <phil.ewels@seqera.io>
d9325b2 to
310bdee
Compare
Member
Author
|
@pditommaso @bentsherman - I resurrected this old PR. Should be good to go now if we're happy with the behaviour? |
pditommaso
approved these changes
Jan 9, 2026
Update documentation to reflect that conda.channels now defaults to 'conda-forge,bioconda' when not explicitly specified. Signed-off-by: Claude <noreply@anthropic.com>
Member
|
Can you remind me what's the reason for changing the defaults? |
Member
Author
|
As I remember it, there were two main reasons:
|
Signed-off-by: Ben Sherman <bentshermann@gmail.com>
pditommaso
pushed a commit
that referenced
this pull request
Jan 16, 2026
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
4 participants
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
If
conda.channelsis not specified, set it toconda-forge,biocondaby default.Quick edit, haven't adjusted tests or anything here, just wanted to raise for discussion.