Psolve direct#5
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From finitialize in nrn:
0 coreneuron psolve to tstop
1 nrn psolve to tstop/2, then coreneuron psolve to tstop
2 coreneuron series of psolve. while (t < tstop) { psolve(t + 1) }
3 series of interleaved nrn and coreneuron psolve(t + .5)
pass on command line with -c arg_psolve_test_mode=value
alexsavulescu
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Aug 20, 2021
pramodk
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Aug 20, 2021
…same as NEURON only (#1192) * See the corresponding change in CoreNEURON: BlueBrain/CoreNeuron@c432c13 * This change implements following improvements for CoreNEURON usage: - CoreNEURON direct mode does not do its own version of finitialize(). - On entry to CoreNEURON, all state needed to continue a simulation is copied from NEURON (including Event Queue). - On exit from CoreNEURON all state needed to continue the simulation in NEURON is copied from CoreNEURON (including EventQueue) * Implementation for copying event queue back to NEURON. * Updated testcorenrn with more test: neuronsimulator/testcorenrn#5 * Updated coreneuron submodule: BlueBrain/CoreNeuron#528 * Update rst documentation for the new change * Increase error verbosity for CI debugging. * h.nrnmpi_init() must be called early to avoid mpi error on exit. * Add more tests for net_move, net_send and watch statements * Add tests for neuron<->coreneuron alternate execution * Test of multiple activated WATCH statements. - Note: only one can be triggered at a time. * psolve transfer corenrn -> nrn calls bbcore_read in nrn. - This is needed at least to update nrnran123 sequence state in order to be able to continue psolve on either side. Updated coreneuron and testcorenrn. * Global methods to set and get HOC Random123 sequence. int nrn_random123_setseq(Rand* r, uint32_t seq, char which); int nrn_random123_getseq(Rand* r, uint32_t* seq, char* which); Update external/coreneuron Extend a couple tests for psolve. * Spike transfer from CoreNEURON should append to spike vectors. Begin extending tests involving psolve with CoreNERUON to verify that psolve is restartable. * Framework for copying event queue back to NEURON. * Event Queue NEURON->CoreNEURON NetCon, Presyn, SelfEvent Co-authored-by: Alexandru S�<83>vulescu <alexandru.savulescu@epfl.ch> Co-authored-by: Michael Hines <michael.hines@yale.edu> Co-authored-by: Olli Lupton <oliver.lupton@epfl.ch> Co-authored-by: Pramod Kumbhar <pramod.s.kumbhar@gmail.com> Closes #1066 Closes #826
pramodk
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Related to neuronsimulator/nrn#1192