…ings to snapshot

- Skip resources marked deleted when extracting from DataReadings
- Append only non-deleted runtime.Objects to avoid nil entries
- Document that extractor functions exclude deleted resources
- Update tests and example input to assert deleted resources are ignored
- Document the motivation for the caching mechanism and its faults

Signed-off-by: Richard Wall <richard.wall@cyberark.com>

[VC-46370] CyberArk: Skip deleted resources when converting data readings to snapshot

- Bump github.com/jetstack/venafi-connection-lib to v0.5.1
- Bump k8s.io/utils to v0.0.0-20251002143259-bc988d571ff4

Signed-off-by: Richard Wall <richard.wall@cyberark.com>

…onents (#739)

* update and generate crds

* fix: rename to certificate manager

* fix: generate venafi-connection-crd

* Update deploy/charts/venafi-kubernetes-agent/Chart.yaml

Co-authored-by: Atanas Chuchev <achuchev@users.noreply.github.com>

* Update pkg/client/client_venafi_cloud.go

Co-authored-by: Atanas Chuchev <achuchev@users.noreply.github.com>

* Update deploy/charts/venafi-kubernetes-agent/values.yaml

Co-authored-by: Atanas Chuchev <achuchev@users.noreply.github.com>

* fix: generate crds

* fix: run generage

* Update deploy/charts/venafi-kubernetes-agent/values.yaml

Co-authored-by: Atanas Chuchev <achuchev@users.noreply.github.com>

* fix: run generate commands

---------

Co-authored-by: Atanas Chuchev <achuchev@users.noreply.github.com>

Signed-off-by: Richard Wall <richard.wall@cyberark.com>

Because venafi-connection-lib 0.5.1 includes the debugging roundtripper as part
of the default client.
Added debug logging to the ark-test-e2e so that I can see the debug logging
still working.

- Remove debug roundtripper from agent HTTP client
- Drop import of k8s.io/client-go/transport
- Enable verbose logging in e2e helm chart (set --log-level=6)

Signed-off-by: Richard Wall <richard.wall@cyberark.com>

[VC-46486] Update venafi-connection-lib to v0.5.1