Permute and reverse-complement the strings to minimize the number of abundance runs#4
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Permute and reverse-complement the strings to minimize the number of abundance runs#4
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This command re-orders (and possibly reverse-complement) the strings in the collection to minimize the number of runs in the abundances and, hence, optimize the encoding of the abundances. This is achieved via the program
./permutewhich, in turn, uses thebuilder/cover.hppclass to build the permutation.