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Jakevdp manifold#1

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jakevdp merged 285 commits intojakevdp:manifoldfrom
ogrisel:jakevdp-manifold
Jun 18, 2011
Merged

Jakevdp manifold#1
jakevdp merged 285 commits intojakevdp:manifoldfrom
ogrisel:jakevdp-manifold

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@ogrisel ogrisel commented Jun 17, 2011

Hi here are a couple of fixes to try to make the merge with current master possible.

ogrisel and others added 30 commits May 21, 2011 14:46
* use size_t consistently
* use auto_ptr to prevent memory leaks
* some minor fixes
The user can now choose either Mean Squared Error, Root Mean Squared
Error or Sum of Squared Errors through a keyword.
Others types of error may be implemented depending on future needs.
* predict_proba now gives true probabilities (by normalizing by the evidence)
* if use_priors is False, use uniform priors instead of skipping computation
I feel it is a little hacky  since I copy init at the very begining, not in "_init_centroids".
But in this function, X_mean would not be available. And I like this solution better than adding
another argument to _init_centroids.
mblondel and others added 20 commits June 13, 2011 00:10
No link for reference to Manning et al. since nlp.stanford.edu seems
to be down. Should add this later.
Naive Bayes classifier for multivariate Bernoulli (binary features)
Memory leak and exception safety in SVMlight reader
Conflicts:
	doc/modules/datasets.rst
Fast loader for the svmlight / libsvm format
jakevdp added a commit that referenced this pull request Jun 18, 2011
@jakevdp jakevdp merged commit cd694e7 into jakevdp:manifold Jun 18, 2011
jakevdp pushed a commit that referenced this pull request May 6, 2012
jakevdp pushed a commit that referenced this pull request May 6, 2012
jakevdp pushed a commit that referenced this pull request Aug 1, 2012
REF: hack to be able to share distutils utilities.
jakevdp pushed a commit that referenced this pull request Jul 2, 2013
jakevdp pushed a commit that referenced this pull request Jul 2, 2013
jakevdp pushed a commit that referenced this pull request May 7, 2015
jakevdp pushed a commit that referenced this pull request Mar 2, 2017
…scikit-learn#7838)

* initial commit for return_std

* initial commit for return_std

* adding tests, examples, ARD predict_std

* adding tests, examples, ARD predict_std

* a smidge more documentation

* a smidge more documentation

* Missed a few PEP8 issues

* Changing predict_std to return_std #1

* Changing predict_std to return_std #2

* Changing predict_std to return_std #3

* Changing predict_std to return_std final

* adding better plots via polynomial regression

* trying to fix flake error

* fix to ARD plotting issue

* fixing some flakes

* Two blank lines part 1

* Two blank lines part 2

* More newlines!

* Even more newlines

* adding info to the doc string for the two plot files

* Rephrasing "polynomial" for Bayesian Ridge Regression

* Updating "polynomia" for ARD

* Adding more formal references

* Another asked-for improvement to doc string.

* Fixing flake8 errors

* Cleaning up the tests a smidge.

* A few more flakes

* requested fixes from Andy

* Mini bug fix

* Final pep8 fix

* pep8 fix round 2

* Fix beta_ to alpha_ in the comments
agramfort pushed a commit that referenced this pull request Jul 18, 2018
* Add averaging option to AMI and NMI

Leave current behavior unchanged

* Flake8 fixes

* Incorporate tests of means for AMI and NMI

* Add note about `average_method` in NMI

* Update docs from AMI, NMI changes (#1)

* Correct the NMI and AMI descriptions in docs

* Update docstrings due to averaging changes

- V-measure
- Homogeneity
- Completeness
- NMI
- AMI

* Update documentation and remove nose tests (#2)

* Update v0.20.rst

* Update test_supervised.py

* Update clustering.rst

* Fix multiple spaces after operator

* Rename all arguments

* No more arbitrary values!

* Improve handling of floating-point imprecision

* Clearly state when the change occurs

* Update AMI/NMI docs

* Update v0.20.rst

* Catch FutureWarnings in AMI and NMI
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8 participants