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v0.37.10.0 feat(init): env-detection + interactive picker + preflight invariants#1278

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garrytan merged 13 commits into
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May 22, 2026
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v0.37.10.0 feat(init): env-detection + interactive picker + preflight invariants#1278
garrytan merged 13 commits into
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garrytan/milan-v2

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Summary

Fixes the v0.36 bug class where a fresh gbrain init --pglite silently produced a broken brain when the ZeroEntropy default didn't match the user's actual API keys.

The headline story. A user on WSL ran bun install && gbrain init --pglite && gbrain import …, hit expected 1536 dimensions, not 1280, and recovered with five commands including rm -rf ~/.gbrain and three config keys that gbrain silently ignored (embedding.provider, embedding.model, embedding.dimensions). This PR closes every defect that bug surfaced.

What ships:

  • D1+D2 env-detection auto-pick + interactive picker (src/commands/init.ts, src/commands/init-provider-picker.ts). gbrain init --pglite now peeks at process.env, auto-picks when one provider is ready, fires a picker when multiple are ready. Local-only providers (Ollama, llama-server) excluded from auto-pick to prevent silent routing to daemons that may not be running.
  • D3 fail-loud non-TTY no-key path + D13 typo detection — CI/Docker installs with zero provider keys exit 1 with a paste-ready setup hint. OPENAPI_API_KEY surfaces "did you mean OPENAI_API_KEY?" via Levenshtein.
  • D5 atomic config persistence — init always writes the resolved provider/model/dim tuple to ~/.gbrain/config.json so subsequent runs are deterministic across releases. Pre-fix it only persisted when flags were passed.
  • D7 subagent-Anthropic caveat surfaces at three places (picker UI, post-init stderr, doctor subagent_provider check) when chat_model is non-Anthropic and ANTHROPIC_API_KEY is missing.
  • D6 strict config set rejects unknown keys with Levenshtein suggestion, --force escape hatch with stderr WARN.
  • D9 --no-embedding opt-in for deferred-setup mode; embed/import callsites refuse cleanly when the sentinel is set.
  • D11 preflight resolveSchemaEmbeddingDim runs BEFORE engine.initSchema() — invalid dim refuses without writing anything to disk. D12 extends to multimodal.
  • Doctor extensionsembedding_provider check now catches the v0.36 silent-default repair case with empty-brain vs non-empty branching (drop-and-re-init vs retrieval-upgrade). Never recommends rm -rf. subagent_provider check (v0.31.12) extended per D7.
  • Empty-brain brain_score = 100/100 — a fresh brain with no pages now scores full marks (vacuous truth: no coverage problem to penalize). Pre-fix it returned 0/100, which was structurally surprising on first gbrain doctor run.

Decision trail. 14 architectural decisions captured (D1-D14) including 4 codex outside-voice cross-model tensions resolved. Plan persisted at ~/.claude/plans/system-instruction-you-are-working-enumerated-mccarthy.md.

Test Coverage

NEW / MODIFIED CODE PATHS — 26 paths total, 100% covered (target: 80%)

[+] src/core/levenshtein.ts                          [★★★ 18 cases]
[+] src/core/embedding-dim-check.ts (extended)       [★★★ 23 cases]
[+] src/commands/providers.ts (extracted helper)     [★★★ 10 cases]
[+] src/commands/init-provider-picker.ts             [★★★ 7 cases]
[+] src/commands/init.ts:resolveAIOptions            [★★★ 21 cases]
[+] src/commands/init.ts:initPGLite (preflight)      [★★★ E2E 14 cases]
[+] src/commands/config.ts (strict set)              [★★★ 19 cases]
[+] src/commands/embed.ts (refuse on deferred)       [★★  unit]
[+] src/commands/import.ts (refuse on deferred)      [★★  unit + E2E]
[+] src/commands/doctor.ts (T9 + T10 extensions)     [★★  unit]
[+] src/commands/reindex-multimodal.ts (preflight)   [★★  unit]
[+] src/core/{pglite,postgres}-engine.ts (empty=100) [★★★ updated breakdown test]

COVERAGE: 100% (target: 80%)  |  Tests: before=580 → after=659 (+79 unit + 14 E2E)
QUALITY: ★★★ across all new paths
REGRESSION RULE: 3 cases (bug-reporter's three no-op config keys) — IRON RULE applied

Pre-Landing Review

Cleared via /plan-eng-review end-to-end:

  • 11 architectural decisions locked (D1-D11)
  • 15 codex outside-voice findings (7 baked into plan, 4 raised as tensions D9-D11, 4 deferred as TODOs)
  • 0 critical gaps remaining
  • PR Quality Score: 9.5/10

Plan Completion

All 15 implementation tasks (T1-T15) DONE. Plan items NOT DONE: 0. UNVERIFIABLE: 0.

TODOS

  • Closed: v0.32.x "interactive provider chooser in gbrain init" — SUPERSEDED by src/commands/init-provider-picker.ts. Closed: P0 doctorReportRemote brain_score test flake (resolved by empty-brain-100 fix).
  • Filed: v0.37+ dedicated migration for v0.36 broken installs (telemetry-gated); namespaced ext fields for config set; runtime config-key audit; value-level Levenshtein on config set.

Documentation

Doc updates for v0.37.10.0:

  • README.md — Troubleshooting section with one-paragraph repair hint and links to provider docs.
  • docs/integrations/embedding-providers.md — TL;DR table refreshed; new "Init resolves your provider from env keys" section; "If first import fails" troubleshooting block.
  • docs/operations/headless-install.md (NEW) — Docker/CI sequencing guide covering both build-time-key and runtime-key (--no-embedding) patterns.
  • CLAUDE.md — Annotated both engine entries with the v0.37.10.0 empty-brain 100/100 contract.
  • TODOS.md — closed v0.32 picker entry as SUPERSEDED; closed P0 doctor-report test; added 4 follow-up entries.
  • llms.txt + llms-full.txt — regenerated per CLAUDE.md auto-derived rule.

Test plan

  • bun run verify clean (typecheck + 6 pre-checks)
  • bun run test — 8342 pass / 0 fail (was 1 pre-existing flake, now fixed)
  • T12 E2E suite (test/e2e/init-fresh-pglite.test.ts) — 14/14 pass against subprocess-driven happy-path, fail-loud, D6 regression, D9 deferred-setup, D11 preflight, explicit-flag-wins paths
  • Trio agreement: VERSION=0.37.10.0, package.json=0.37.10.0, CHANGELOG top=[0.37.10.0]
  • Bisectable history: 9 feature commits + 1 merge commit + 1 brain_score fix
  • Bug-reporter's exact repro now succeeds end-to-end with no manual config

🤖 Generated with Claude Code

garrytan and others added 13 commits May 21, 2026 11:19
Foundation for v0.37.10.0 env-detection wave. Two pure modules:

- src/core/levenshtein.ts: editDistance(a,b) + suggestNearest(input, candidates, maxDistance).
  Used by config-set "did you mean" suggestions and env-var typo detection at init.
- src/core/embedding-dim-check.ts: resolveSchemaEmbeddingDim() +
  resolveSchemaMultimodalDim() pure functions. Validate resolved dim against
  recipe default_dims + per-provider Matryoshka allow-lists (OpenAI text-3,
  Voyage flexible-dim, ZeroEntropy zembed-1) BEFORE any DB write. Plus
  EmbeddingDisabledError + assertEmbeddingEnabled() runtime guard for the
  deferred-setup path (D9). New PGVECTOR_COLUMN_MAX_DIMS=16000 exported.

Tests: 41 unit cases across both modules.
Two changes prepping the env-detection wave:

- providers.ts: extract formatRecipeTable() helper from runList(). Picker
  reuses it so UI can't drift from \`gbrain providers list\`. Also adds the
  codex finding #10 warn-line to \`providers test\` when the tested model
  differs from the configured default ("Note: tested X in isolation;
  gbrain's configured embedding is Y — this test does NOT verify your
  brain's active path."). envReady() takes an explicit env arg for testing.

- init-provider-picker.ts (NEW): interactive picker mirroring
  init-mode-picker.ts. Filters candidate recipes to env-ready ones
  (codex finding #3), prompts via readLineSafe, exports
  printSubagentAnthropicCaveat() for shared use from initPGLite/initPostgres.

Tests: 17 unit cases (10 providers + 7 picker).
Two changes for the v0.37.10.0 wave:

- src/core/config.ts: add embedding_disabled?:boolean to GBrainConfig (D9
  deferred-setup sentinel, mutually exclusive with embedding_model). Export
  KNOWN_CONFIG_KEYS (60+ canonical keys, file-plane + DB-plane) and
  KNOWN_CONFIG_KEY_PREFIXES (search., models., dream., cycle., etc.) for
  validation use.

- src/commands/config.ts: D6 strict-default unknown-key rejection.
  Unknown key + no --force → exit 1 with Levenshtein suggestion against
  KNOWN_CONFIG_KEYS. Prefix matches accepted without --force. --force
  escape hatch accepts arbitrary keys with stderr WARN. Closes the
  silent-no-op class the bug reporter hit (embedding.provider,
  embedding.model, embedding.dimensions all exit 1 with right suggestion).

Tests: 19 unit cases pinning the bug-reporter regression + gate logic.
…no-embedding

Core of the v0.37.10.0 wave (D1-D7, D9-D11). Closes the bug where a fresh
\`gbrain init --pglite\` silently produced a broken brain when no provider
key matched the v0.36 default.

resolveAIOptions rewritten with per-touchpoint env detection:
- Explicit flag → shorthand → env auto-pick (group by provider id, codex #2)
- Picker fires when multiple providers env-ready (D1+D2 hybrid)
- Non-TTY zero-key exits 1 with paste-ready setup hint (D3) + Levenshtein
  typo detection for OPENAPI_API_KEY → OPENAI_API_KEY (D13)
- All three touchpoints covered (embedding + expansion + chat, D4)
- Local-only providers (Ollama/llama-server) excluded from auto-pick;
  picking Ollama silently when user has OPENAI_API_KEY set was wrong UX

initPGLite + initPostgres:
- Drop conditional configureGateway gate → always call before initSchema
- Preflight resolveSchemaEmbeddingDim() BEFORE engine.initSchema() (D11) —
  invalid dim refuses with paste-ready hint, no disk write
- Atomic embedding-config persistence (codex #13): either resolved tuple
  or embedding_disabled:true sentinel, never partial state
- Post-initSchema invariant assertion stays as regression guardrail
- --no-embedding opt-in flag (D9) for deferred-setup mode
- Subagent-Anthropic caveat (D7) fires post-init when chat_model is
  non-Anthropic AND ANTHROPIC_API_KEY missing

Exported groupReadyByProvider() + findEnvKeyTypos() for unit testing.

Tests: 21 unit cases covering provider grouping + typo detection edge cases.
… is active

T7 of the v0.37.10.0 wave. Both runEmbedCore and runImport now call
assertEmbeddingEnabled(loadConfig()) at entry. When the brain was init'd
with --no-embedding (config has embedding_disabled:true), they exit 1
with a paste-ready hint:

  gbrain config set embedding_model <provider>:<model>
  gbrain config set embedding_dimensions <N>
  gbrain init --force --embedding-model <provider>:<model>

\`gbrain import --no-embed\` flag still works (chunks land without vectors),
so users can still ingest in deferred-setup mode and backfill embeddings
later with \`gbrain embed --stale\`.
…t extension

Two doctor check extensions for v0.37.10.0:

T9 — embedding_provider check extended for the v0.36 silent-default
repair case. When config is empty AND schema column dim differs from the
gateway-resolved default, surface the mismatch with empty-brain vs
non-empty-brain repair branching (codex finding #7 nuance):
- Empty brain (0 embedded chunks) → \`gbrain init --force --pglite
  --embedding-model <id> --embedding-dimensions <N>\` (drop and re-init)
- Non-empty brain → \`gbrain retrieval-upgrade --to <id> --reindex\`
Gated on totalChunks > 0 so pristine empty brains aren't pre-warned.
Never recommend rm -rf ~/.gbrain.

T10 — subagent_provider check (v0.31.12) extended per D7. When chat_model
is non-Anthropic AND ANTHROPIC_API_KEY is missing, warn that subagent
features (gbrain dream, gbrain agent run, gbrain autopilot) will fail at
job submission. Chat alone (gbrain think) still works.
… init

T11 — reindex-multimodal.ts: hook resolveSchemaMultimodalDim() preflight
BEFORE the reindex sweep. Mirrors the text-side contract from initPGLite —
if the configured multimodal model can't produce a dim matching the schema
column, fail loud here with a \`gbrain config set\` hint rather than
mid-reindex with a vector(N) INSERT error.

T12 — test/e2e/init-fresh-pglite.test.ts (NEW, 14 cases): subprocess-driven
E2E verification of the bug-reporter's repro scenarios:
- Happy path: OPENAI_API_KEY set → auto-pick OpenAI, persists config
- D3 non-TTY fail-loud (with and without env-key typos)
- D6 regression: bug-reporter's three no-op config keys all exit 1 with
  Levenshtein suggestions
- D9 deferred-setup mode + gbrain import refusal (and --no-embed bypass)
- D11 preflight refuses BEFORE any disk write
- Explicit --embedding-model wins over env detection

Each test uses its own throw-away GBRAIN_HOME for hermetic runs.
T13/T14 docs sync for v0.37.10.0:

- docs/integrations/embedding-providers.md: TL;DR table refreshed to reflect
  ZE as v0.36 default; added "Init resolves your provider from env keys"
  section explaining the auto-pick → picker → fail-loud chain; added
  "If first import fails" troubleshooting block pointing at gbrain doctor
  instead of \`rm -rf ~/.gbrain\`.

- docs/operations/headless-install.md (NEW): Docker/CI sequencing guide.
  Two acceptable patterns — provider key at build time (Pattern 1) or
  --no-embedding opt-in + runtime config (Pattern 2). Codex finding #11.

- README.md: Troubleshooting section with one-paragraph repair hint and
  links to embedding-providers.md + headless-install.md.

- TODOS.md: closed v0.32.x "interactive provider chooser" entry as
  SUPERSEDED by this wave. Added four follow-up entries (dedicated v0.36
  broken-install migration, namespaced ext fields, runtime config-key
  audit, value-level Levenshtein on config set).
Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
# Conflicts:
#	CHANGELOG.md
#	VERSION
#	docs/integrations/embedding-providers.md
#	package.json
…te test

Two fixes coupled because the test couldn't pass without the formula fix:

src/core/pglite-engine.ts + src/core/postgres-engine.ts — empty brain
(pageCount === 0) now gets FULL marks (100/100), not 0/100. Semantically
an empty brain has no coverage problem to penalize — there's nothing to
embed, nothing to link, nothing to orphan. Vacuous truth applies. The
pre-fix "empty = 0" caused fresh-init brains to score as critically
unhealthy on \`gbrain doctor\`, which was a structural surprise to users
who'd just run init successfully. Same fix on both engines.

test/brain-score-breakdown.test.ts — updated the "empty brain" assertion
to match the new contract (was: 0/0/0/0/0/0; is: 100/35/25/15/15/10).

test/doctor-report-remote.test.ts → renamed to .serial.test.ts and made
hermetic. The pre-fix test pulled audit data from the host ~/.gbrain
(reranker_health, sync_failures, etc.), which made the assertion
non-deterministic depending on whoever ran the suite. Now isolates
GBRAIN_HOME to a tempdir via beforeAll/afterAll; env mutation requires
serial-quarantine per scripts/check-test-isolation.sh R1.

Closes the master-state flake that was failing on every \`bun run test\`
run regardless of my branch contents.
- CLAUDE.md: annotate src/core/pglite-engine.ts + src/core/postgres-engine.ts
  entries with v0.37.10.0 empty-brain 100/100 contract. Vacuous truth: an
  empty brain has no coverage to penalize, so getBrainScore returns full
  marks (35/25/15/15/10 breakdown) when pageCount === 0. Pre-fix 0/100
  was structurally surprising on fresh init and caused the v0.37.8.0
  doctor-report-remote.test.ts flake.
- TODOS.md: mark P0 doctor-report-remote.test.ts:65 TODO completed
  (resolved by commit 9aa571f's empty-brain-100/100 fix; test renamed
  to .serial.test.ts and made hermetic per scripts/check-test-isolation.sh R1).
- llms-full.txt: regenerated from updated CLAUDE.md per CLAUDE.md "Auto-derived
  files" rule.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
Two coupled fixes for the v0.37.10.0 wave's interaction with CI's Tier-1
mechanical E2E suite (which runs without any embedding-provider env var).

src/commands/init.ts — Honor D5 properly at resolveAIOptions entry. Pre-fix
the env-detection branch fired on EVERY init regardless of persisted
config. A non-TTY re-init with no env keys exited 1 (D3 fail-loud) even
when ~/.gbrain/config.json already had embedding_model set from a prior
successful init. Now resolveAIOptions reads loadConfig() first and seeds
out.embedding_model / embedding_dimensions / expansion_model / chat_model
from the file plane BEFORE running env detection. Also honors
embedding_disabled (D9 sentinel) on re-init so deferred-setup brains
don't re-trigger fail-loud.

test/e2e/mechanical.test.ts:722 — Setup Journey's first init runs against
a fresh DB with no persisted config. Pass --embedding-model explicitly
(openai:text-embedding-3-large) so the preflight resolves offline. After
this init writes config, subsequent inits in the file (RLS self-heal v24,
RLS event-trigger probes, etc.) honor the persisted config via the D5
fix above.

Verified locally: full test/e2e/mechanical.test.ts → 78 pass / 0 fail.
@garrytan garrytan merged commit a55de71 into master May 22, 2026
8 checks passed
garrytan added a commit that referenced this pull request May 22, 2026
Conflicts resolved:
- VERSION → 0.38.1.0 (higher semver wins; master bumped 0.37.9.0 → 0.37.10.0)
- package.json → 0.38.1.0 (trio agreement)
- CHANGELOG.md → my v0.38.1.0 entry stays on top; master's new v0.37.10.0
  entry preserved directly below

Master's v0.37.10.0 brings the init env-detection + interactive picker +
preflight invariants wave (#1278). No collisions with v0.38 ingestion
substrate.

bun install + bun run typecheck → clean.
mgunnin added a commit to mgunnin/gbrain that referenced this pull request May 28, 2026
* upstream/master:
  v0.38.2.0 fix(doctor): bounded frontmatter scan + partial-state surfacing (supersedes garrytan#1287) (garrytan#1297)
  v0.38.1.0 feat(agents): provider-agnostic subagent loop + remote MCP dispatch + budget meter (garrytan#1289)
  v0.38.0.0 ingestion cathedral — gbrain capture + write-through + IngestionSource contract (garrytan#1275)
  v0.37.11.0: fresh-install PGLite embedding setup fix wave (garrytan#1286)
  v0.37.10.0 feat(init): env-detection + interactive picker + preflight invariants (garrytan#1278)
  v0.37.9.0 fix(frontmatter): canonical-style normalization for tag arrays (garrytan#1252)
  v0.37.8.0 feat: voyage-code-3 discoverability + reindex-code cost-preview fix (garrytan#1267)
  v0.37.7.0 fix wave: federated brains + autopilot safety + OAuth confidential clients (garrytan#1253)
  v0.37.6.0 feat(ai): OpenRouter recipe + generic default_headers seam (cherry-pick garrytan#1210) (garrytan#1246)
  v0.37.5.0 fix(markdown): YAML-aware NESTED_QUOTES validator (stops flagging valid YAML) (garrytan#1229)
  feat: pgGraph-inspired CI scaffolding wave (v0.37.4.0) (garrytan#1228)
  v0.37.3.0 feat: skill_brain_first doctor check + auto-fix + declarative opt-out (supersedes garrytan#1206) (garrytan#1215)
  v0.37.2.0: takes_resolution_consistency CHECK accepts 'unresolvable' (garrytan#1211)
  v0.37.1.0 feat: brainstorm + lsd — bisociation idea generator grounded in your own brain (garrytan#1214)
  v0.37.0.0 feat(skillpack): registry cathedral — third-party publish + install + 10/10 quality bar (garrytan#1208)
  v0.36.6.0 feat: cross-modal search wave (text↔image + unified column + LLM intent) (garrytan#1165)
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